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Cluster: HRGMv2_3786_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3786_16 HRGMv2_3786_16_2 2839 4692 + 3.A.1.106.3
TC HRGMv2_3786_16 HRGMv2_3786_16_3 4770 7898 - 2.A.6.2.25
TC HRGMv2_3786_16 HRGMv2_3786_16_4 7951 9096 - 2.A.6.2.42
TF HRGMv2_3786_16 HRGMv2_3786_16_5 9087 9551 - MarR
CAZyme HRGMv2_3786_16 HRGMv2_3786_16_6 9867 11162 - GH27
pfam HRGMv2_3786_16 HRGMv2_3786_16_7 11186 12670 - tRNA-synt_1c | Anticodon_2
NULL(UNKNOWN) HRGMv2_3786_16 HRGMv2_3786_16_8 13285 13680 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3786_16 HRGMv2_3786_16_9 14248 15852 + 2.A.49.6.4
pfam HRGMv2_3786_16 HRGMv2_3786_16_10 16085 16903 + OMPdecase
pfam HRGMv2_3786_16 HRGMv2_3786_16_11 17032 18078 + LptF_LptG
TC HRGMv2_3786_16 HRGMv2_3786_16_12 18113 19966 + 3.A.1.5.20
pfam HRGMv2_3786_16 HRGMv2_3786_16_13 20009 20812 + DapB_N | DapB_C
CAZyme HRGMv2_3786_16 HRGMv2_3786_16_14 20835 22007 + GT19
Gene ID: HRGMv2_3786_16_2
Type: TC
Location: 2839 - 4692 (+)
Gene ID: HRGMv2_3786_16_3
Type: TC
Location: 4770 - 7898 (-)
Gene ID: HRGMv2_3786_16_4
Type: TC
Location: 7951 - 9096 (-)
Gene ID: HRGMv2_3786_16_5
Type: TF
Location: 9087 - 9551 (-)
Gene ID: HRGMv2_3786_16_6
Type: CAZyme
Location: 9867 - 11162 (-)
Gene ID: HRGMv2_3786_16_7
Type: pfam
Location: 11186 - 12670 (-)
Gene ID: HRGMv2_3786_16_8
Type:
Location: 13285 - 13680 (-)
Gene ID: HRGMv2_3786_16_9
Type: TC
Location: 14248 - 15852 (+)
Gene ID: HRGMv2_3786_16_10
Type: pfam
Location: 16085 - 16903 (+)
Gene ID: HRGMv2_3786_16_11
Type: pfam
Location: 17032 - 18078 (+)
Gene ID: HRGMv2_3786_16_12
Type: TC
Location: 18113 - 19966 (+)
Gene ID: HRGMv2_3786_16_13
Type: pfam
Location: 20009 - 20812 (+)
Gene ID: HRGMv2_3786_16_14
Type: CAZyme
Location: 20835 - 22007 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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