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Cluster: HRGMv2_3783_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3783_29 HRGMv2_3783_29_28 39098 42169 + 2.A.6.3.2
CAZyme HRGMv2_3783_29 HRGMv2_3783_29_29 42176 43000 - GH16
STP HRGMv2_3783_29 HRGMv2_3783_29_30 43280 43837 - Sigma70_r2
TF HRGMv2_3783_29 HRGMv2_3783_29_31 43954 44790 - HTH_AraC
CAZyme HRGMv2_3783_29 HRGMv2_3783_29_32 44880 46661 + GH29
pfam HRGMv2_3783_29 HRGMv2_3783_29_33 46707 47237 + CBM_4_9
CAZyme HRGMv2_3783_29 HRGMv2_3783_29_34 47402 49516 + CE20 | CE20
Gene ID: HRGMv2_3783_29_28
Type: TC
Location: 39098 - 42169 (+)
Gene ID: HRGMv2_3783_29_29
Type: CAZyme
Location: 42176 - 43000 (-)
Gene ID: HRGMv2_3783_29_30
Type: STP
Location: 43280 - 43837 (-)
Gene ID: HRGMv2_3783_29_31
Type: TF
Location: 43954 - 44790 (-)
Gene ID: HRGMv2_3783_29_32
Type: CAZyme
Location: 44880 - 46661 (+)
Gene ID: HRGMv2_3783_29_33
Type: pfam
Location: 46707 - 47237 (+)
Gene ID: HRGMv2_3783_29_34
Type: CAZyme
Location: 47402 - 49516 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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