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Cluster: HRGMv2_3783_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3783_2 HRGMv2_3783_2_28 31436 32410 - 3.A.1.2.15
TC HRGMv2_3783_2 HRGMv2_3783_2_29 32391 33860 - 3.A.1.2.1
TC HRGMv2_3783_2 HRGMv2_3783_2_30 33875 34708 - 3.A.1.132.3
pfam HRGMv2_3783_2 HRGMv2_3783_2_31 34732 35223 - CTP_transf_like
NULL(UNKNOWN) HRGMv2_3783_2 HRGMv2_3783_2_32 35223 35780 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3783_2 HRGMv2_3783_2_33 35930 37105 + 2.A.21.9.1
TF HRGMv2_3783_2 HRGMv2_3783_2_34 37102 38457 + HTH_8
CAZyme HRGMv2_3783_2 HRGMv2_3783_2_35 38460 40268 + GH20
pfam HRGMv2_3783_2 HRGMv2_3783_2_36 40276 41145 + DUF5131 | GP88
TC HRGMv2_3783_2 HRGMv2_3783_2_37 41201 42571 - 3.A.5.2.2
Gene ID: HRGMv2_3783_2_28
Type: TC
Location: 31436 - 32410 (-)
Gene ID: HRGMv2_3783_2_29
Type: TC
Location: 32391 - 33860 (-)
Gene ID: HRGMv2_3783_2_30
Type: TC
Location: 33875 - 34708 (-)
Gene ID: HRGMv2_3783_2_31
Type: pfam
Location: 34732 - 35223 (-)
Gene ID: HRGMv2_3783_2_32
Type:
Location: 35223 - 35780 (-)
Gene ID: HRGMv2_3783_2_33
Type: TC
Location: 35930 - 37105 (+)
Gene ID: HRGMv2_3783_2_34
Type: TF
Location: 37102 - 38457 (+)
Gene ID: HRGMv2_3783_2_35
Type: CAZyme
Location: 38460 - 40268 (+)
Gene ID: HRGMv2_3783_2_36
Type: pfam
Location: 40276 - 41145 (+)
Gene ID: HRGMv2_3783_2_37
Type: TC
Location: 41201 - 42571 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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