Cluster: HRGMv2_3783_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3783
- CGC Family ID: CGCFAM_10435
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3783_5 | HRGMv2_3783_5_5 | 5403 | 6746 | + | GH13 |
| pfam | HRGMv2_3783_5 | HRGMv2_3783_5_6 | 6978 | 7235 | + | TM1266-like |
| pfam | HRGMv2_3783_5 | HRGMv2_3783_5_7 | 7254 | 8672 | + | Radical_SAM | BATS |
| TC | HRGMv2_3783_5 | HRGMv2_3783_5_8 | 8676 | 9305 | + | 1.C.113.1.10 |
| NULL(UNKNOWN) | HRGMv2_3783_5 | HRGMv2_3783_5_9 | 9307 | 10164 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_3783_5 | HRGMv2_3783_5_10 | 10230 | 10853 | - | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | HRGMv2_3783_5 | HRGMv2_3783_5_11 | 11172 | 13361 | + | GH36 |
Gene ID: HRGMv2_3783_5_5
Type: CAZyme
Location: 5403 - 6746 (+)
Type: CAZyme
Location: 5403 - 6746 (+)
Gene ID: HRGMv2_3783_5_6
Type: pfam
Location: 6978 - 7235 (+)
Type: pfam
Location: 6978 - 7235 (+)
Gene ID: HRGMv2_3783_5_7
Type: pfam
Location: 7254 - 8672 (+)
Type: pfam
Location: 7254 - 8672 (+)
Gene ID: HRGMv2_3783_5_8
Type: TC
Location: 8676 - 9305 (+)
Type: TC
Location: 8676 - 9305 (+)
Gene ID: HRGMv2_3783_5_9
Type:
Location: 9307 - 10164 (-)
Type:
Location: 9307 - 10164 (-)
Gene ID: HRGMv2_3783_5_10
Type: STP
Location: 10230 - 10853 (-)
Type: STP
Location: 10230 - 10853 (-)
Gene ID: HRGMv2_3783_5_11
Type: CAZyme
Location: 11172 - 13361 (+)
Type: CAZyme
Location: 11172 - 13361 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Lentisphaeria
Order
Victivallales
Family
UBA1829
Genus
UBA1829
Species
UBA1829 sp900760615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.