Cluster: HRGMv2_3780_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3780
- CGC Family ID: CGCFAM_00251
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3780_1 | HRGMv2_3780_1_335 | 405206 | 406825 | - | 2.A.14.2.1 |
| pfam | HRGMv2_3780_1 | HRGMv2_3780_1_336 | 407076 | 407531 | + | 2Fe-2S_thioredx |
| TC | HRGMv2_3780_1 | HRGMv2_3780_1_337 | 407536 | 409272 | + | 3.D.1.5.1 |
| STP | HRGMv2_3780_1 | HRGMv2_3780_1_338 | 409288 | 411324 | + | Fer4 | Pyr_redox_2 |
| CAZyme | HRGMv2_3780_1 | HRGMv2_3780_1_339 | 411459 | 412541 | - | GH179 |
Gene ID: HRGMv2_3780_1_335
Type: TC
Location: 405206 - 406825 (-)
Type: TC
Location: 405206 - 406825 (-)
Gene ID: HRGMv2_3780_1_336
Type: pfam
Location: 407076 - 407531 (+)
Type: pfam
Location: 407076 - 407531 (+)
Gene ID: HRGMv2_3780_1_337
Type: TC
Location: 407536 - 409272 (+)
Type: TC
Location: 407536 - 409272 (+)
Gene ID: HRGMv2_3780_1_338
Type: STP
Location: 409288 - 411324 (+)
Type: STP
Location: 409288 - 411324 (+)
Gene ID: HRGMv2_3780_1_339
Type: CAZyme
Location: 411459 - 412541 (-)
Type: CAZyme
Location: 411459 - 412541 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Lentisphaeria
Order
Victivallales
Family
UBA1829
Genus
UBA1829
Species
UBA1829 sp900548385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3780_1_337 | vegan > omnivore | 1.00028 | 0.04449 |
| HRGMv2_3780_1_337 | vegetarian > omnivore | 1.31699 | 0.01165 |