Cluster: HRGMv2_3780_CGC56
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3780
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3780_24 | HRGMv2_3780_24_6 | 8760 | 11561 | - | GH39 |
| NULL(UNKNOWN) | HRGMv2_3780_24 | HRGMv2_3780_24_7 | 11580 | 12320 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3780_24 | HRGMv2_3780_24_8 | 12510 | 14039 | - | ADP_ribosyl_GH |
| TC | HRGMv2_3780_24 | HRGMv2_3780_24_9 | 14221 | 15537 | - | 2.A.1.25.3 |
| pfam | HRGMv2_3780_24 | HRGMv2_3780_24_10 | 15548 | 16345 | - | RNase_PH | RNase_PH_C |
| TC | HRGMv2_3780_24 | HRGMv2_3780_24_11 | 16498 | 17397 | - | 3.B.1.1.5 |
Gene ID: HRGMv2_3780_24_6
Type: CAZyme
Location: 8760 - 11561 (-)
Type: CAZyme
Location: 8760 - 11561 (-)
Gene ID: HRGMv2_3780_24_7
Type:
Location: 11580 - 12320 (-)
Type:
Location: 11580 - 12320 (-)
Gene ID: HRGMv2_3780_24_8
Type: pfam
Location: 12510 - 14039 (-)
Type: pfam
Location: 12510 - 14039 (-)
Gene ID: HRGMv2_3780_24_9
Type: TC
Location: 14221 - 15537 (-)
Type: TC
Location: 14221 - 15537 (-)
Gene ID: HRGMv2_3780_24_10
Type: pfam
Location: 15548 - 16345 (-)
Type: pfam
Location: 15548 - 16345 (-)
Gene ID: HRGMv2_3780_24_11
Type: TC
Location: 16498 - 17397 (-)
Type: TC
Location: 16498 - 17397 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Lentisphaeria
Order
Victivallales
Family
UBA1829
Genus
UBA1829
Species
UBA1829 sp900548385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.