Cluster: HRGMv2_3780_CGC45
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3780
- CGC Family ID: CGCFAM_10441
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3780_17 | HRGMv2_3780_17_4 | 2670 | 4358 | - | 3.A.15.4.1 |
| TC | HRGMv2_3780_17 | HRGMv2_3780_17_5 | 4375 | 6099 | - | 3.A.15.4.1 |
| TC | HRGMv2_3780_17 | HRGMv2_3780_17_6 | 6341 | 7666 | + | 2.A.23.1.5 |
| pfam | HRGMv2_3780_17 | HRGMv2_3780_17_7 | 7928 | 9733 | + | TPR_16 | TPR_16 |
| pfam | HRGMv2_3780_17 | HRGMv2_3780_17_8 | 9760 | 10413 | - | Radical_SAM | Fer4_12 |
| CAZyme | HRGMv2_3780_17 | HRGMv2_3780_17_9 | 10410 | 12101 | - | GT2 |
Gene ID: HRGMv2_3780_17_4
Type: TC
Location: 2670 - 4358 (-)
Type: TC
Location: 2670 - 4358 (-)
Gene ID: HRGMv2_3780_17_5
Type: TC
Location: 4375 - 6099 (-)
Type: TC
Location: 4375 - 6099 (-)
Gene ID: HRGMv2_3780_17_6
Type: TC
Location: 6341 - 7666 (+)
Type: TC
Location: 6341 - 7666 (+)
Gene ID: HRGMv2_3780_17_7
Type: pfam
Location: 7928 - 9733 (+)
Type: pfam
Location: 7928 - 9733 (+)
Gene ID: HRGMv2_3780_17_8
Type: pfam
Location: 9760 - 10413 (-)
Type: pfam
Location: 9760 - 10413 (-)
Gene ID: HRGMv2_3780_17_9
Type: CAZyme
Location: 10410 - 12101 (-)
Type: CAZyme
Location: 10410 - 12101 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Lentisphaeria
Order
Victivallales
Family
UBA1829
Genus
UBA1829
Species
UBA1829 sp900548385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.