Cluster: HRGMv2_3780_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3780
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3780_1 | HRGMv2_3780_1_203 | 244370 | 246595 | + | 3.A.11.3.1 |
| pfam | HRGMv2_3780_1 | HRGMv2_3780_1_204 | 246602 | 247012 | - | RF-1 |
| pfam | HRGMv2_3780_1 | HRGMv2_3780_1_205 | 246988 | 247797 | - | Kdo |
| CAZyme | HRGMv2_3780_1 | HRGMv2_3780_1_206 | 247784 | 248920 | - | GT4 |
Gene ID: HRGMv2_3780_1_203
Type: TC
Location: 244370 - 246595 (+)
Type: TC
Location: 244370 - 246595 (+)
Gene ID: HRGMv2_3780_1_204
Type: pfam
Location: 246602 - 247012 (-)
Type: pfam
Location: 246602 - 247012 (-)
Gene ID: HRGMv2_3780_1_205
Type: pfam
Location: 246988 - 247797 (-)
Type: pfam
Location: 246988 - 247797 (-)
Gene ID: HRGMv2_3780_1_206
Type: CAZyme
Location: 247784 - 248920 (-)
Type: CAZyme
Location: 247784 - 248920 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Lentisphaeria
Order
Victivallales
Family
UBA1829
Genus
UBA1829
Species
UBA1829 sp900548385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.