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Cluster: HRGMv2_3780_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3780_8 HRGMv2_3780_8_31 41663 43711 + 3.A.1.106.1
CAZyme HRGMv2_3780_8 HRGMv2_3780_8_32 43821 46151 - GH110
NULL(UNKNOWN) HRGMv2_3780_8 HRGMv2_3780_8_33 46323 46547 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3780_8 HRGMv2_3780_8_34 46662 49967 - GH148 | GH148
NULL(UNKNOWN) HRGMv2_3780_8 HRGMv2_3780_8_35 49992 50708 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_3780_8 HRGMv2_3780_8_36 50705 51715 - LacI
CAZyme HRGMv2_3780_8 HRGMv2_3780_8_37 51954 53111 + CE9
pfam HRGMv2_3780_8 HRGMv2_3780_8_38 53227 54129 + Acyl_transf_1
pfam HRGMv2_3780_8 HRGMv2_3780_8_39 54155 54901 + adh_short | Epimerase | KR | adh_short_C2
TC HRGMv2_3780_8 HRGMv2_3780_8_40 55063 55305 + 3.D.1.6.4
Gene ID: HRGMv2_3780_8_31
Type: TC
Location: 41663 - 43711 (+)
Gene ID: HRGMv2_3780_8_32
Type: CAZyme
Location: 43821 - 46151 (-)
Gene ID: HRGMv2_3780_8_33
Type:
Location: 46323 - 46547 (-)
Gene ID: HRGMv2_3780_8_34
Type: CAZyme
Location: 46662 - 49967 (-)
Gene ID: HRGMv2_3780_8_35
Type:
Location: 49992 - 50708 (-)
Gene ID: HRGMv2_3780_8_36
Type: TF
Location: 50705 - 51715 (-)
Gene ID: HRGMv2_3780_8_37
Type: CAZyme
Location: 51954 - 53111 (+)
Gene ID: HRGMv2_3780_8_38
Type: pfam
Location: 53227 - 54129 (+)
Gene ID: HRGMv2_3780_8_39
Type: pfam
Location: 54155 - 54901 (+)
Gene ID: HRGMv2_3780_8_40
Type: TC
Location: 55063 - 55305 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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