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Cluster: HRGMv2_3780_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3780_7 HRGMv2_3780_7_9 10527 12056 + GH78
pfam HRGMv2_3780_7 HRGMv2_3780_7_10 12307 12834 + Acetyltransf_1 | FR47 | Acetyltransf_3 | Acetyltransf_7
CAZyme HRGMv2_3780_7 HRGMv2_3780_7_11 13164 14492 - GH10
TF HRGMv2_3780_7 HRGMv2_3780_7_12 14607 15566 + HTH_AraC
CAZyme HRGMv2_3780_7 HRGMv2_3780_7_13 15487 17067 - GH78
TC HRGMv2_3780_7 HRGMv2_3780_7_14 17220 18500 + 2.A.103.1.3
CAZyme HRGMv2_3780_7 HRGMv2_3780_7_15 18501 19637 + GT28
TF HRGMv2_3780_7 HRGMv2_3780_7_16 19891 20955 + GntR
CAZyme HRGMv2_3780_7 HRGMv2_3780_7_17 21002 23446 + GH71
Gene ID: HRGMv2_3780_7_9
Type: CAZyme
Location: 10527 - 12056 (+)
Gene ID: HRGMv2_3780_7_10
Type: pfam
Location: 12307 - 12834 (+)
Gene ID: HRGMv2_3780_7_11
Type: CAZyme
Location: 13164 - 14492 (-)
Gene ID: HRGMv2_3780_7_12
Type: TF
Location: 14607 - 15566 (+)
Gene ID: HRGMv2_3780_7_13
Type: CAZyme
Location: 15487 - 17067 (-)
Gene ID: HRGMv2_3780_7_14
Type: TC
Location: 17220 - 18500 (+)
Gene ID: HRGMv2_3780_7_15
Type: CAZyme
Location: 18501 - 19637 (+)
Gene ID: HRGMv2_3780_7_16
Type: TF
Location: 19891 - 20955 (+)
Gene ID: HRGMv2_3780_7_17
Type: CAZyme
Location: 21002 - 23446 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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