Cluster: HRGMv2_3780_CGC23
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3780
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3780_6 | HRGMv2_3780_6_97 | 113156 | 114343 | - | GT4 |
| TC | HRGMv2_3780_6 | HRGMv2_3780_6_98 | 114352 | 114975 | - | 9.B.18.1.1 |
| TC | HRGMv2_3780_6 | HRGMv2_3780_6_99 | 115001 | 116959 | - | 9.B.18.2.1 |
| NULL(UNKNOWN) | HRGMv2_3780_6 | HRGMv2_3780_6_100 | 117133 | 117684 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3780_6 | HRGMv2_3780_6_101 | 118720 | 120627 | - | GH51_10 |
| pfam | HRGMv2_3780_6 | HRGMv2_3780_6_102 | 120670 | 121434 | - | N_methyl |
| TF | HRGMv2_3780_6 | HRGMv2_3780_6_103 | 121620 | 122624 | + | GntR |
| CAZyme | HRGMv2_3780_6 | HRGMv2_3780_6_104 | 122673 | 125831 | - | GH106 |
| CAZyme | HRGMv2_3780_6 | HRGMv2_3780_6_105 | 125955 | 129221 | - | GH148 | GH148 |
| pfam | HRGMv2_3780_6 | HRGMv2_3780_6_106 | 129248 | 130051 | - | N_methyl |
| TF | HRGMv2_3780_6 | HRGMv2_3780_6_107 | 130287 | 131219 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_3780_6 | HRGMv2_3780_6_108 | 131260 | 132231 | - | GH117 | GH117 |
| NULL(UNKNOWN) | HRGMv2_3780_6 | HRGMv2_3780_6_109 | 132427 | 133242 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_3780_6 | HRGMv2_3780_6_110 | 133336 | 134445 | + | LacI |
| CAZyme | HRGMv2_3780_6 | HRGMv2_3780_6_111 | 134499 | 137042 | + | GH50 | GH50 |
Gene ID: HRGMv2_3780_6_97
Type: CAZyme
Location: 113156 - 114343 (-)
Type: CAZyme
Location: 113156 - 114343 (-)
Gene ID: HRGMv2_3780_6_98
Type: TC
Location: 114352 - 114975 (-)
Type: TC
Location: 114352 - 114975 (-)
Gene ID: HRGMv2_3780_6_99
Type: TC
Location: 115001 - 116959 (-)
Type: TC
Location: 115001 - 116959 (-)
Gene ID: HRGMv2_3780_6_100
Type:
Location: 117133 - 117684 (-)
Type:
Location: 117133 - 117684 (-)
Gene ID: HRGMv2_3780_6_101
Type: CAZyme
Location: 118720 - 120627 (-)
Type: CAZyme
Location: 118720 - 120627 (-)
Gene ID: HRGMv2_3780_6_102
Type: pfam
Location: 120670 - 121434 (-)
Type: pfam
Location: 120670 - 121434 (-)
Gene ID: HRGMv2_3780_6_103
Type: TF
Location: 121620 - 122624 (+)
Type: TF
Location: 121620 - 122624 (+)
Gene ID: HRGMv2_3780_6_104
Type: CAZyme
Location: 122673 - 125831 (-)
Type: CAZyme
Location: 122673 - 125831 (-)
Gene ID: HRGMv2_3780_6_105
Type: CAZyme
Location: 125955 - 129221 (-)
Type: CAZyme
Location: 125955 - 129221 (-)
Gene ID: HRGMv2_3780_6_106
Type: pfam
Location: 129248 - 130051 (-)
Type: pfam
Location: 129248 - 130051 (-)
Gene ID: HRGMv2_3780_6_107
Type: TF
Location: 130287 - 131219 (+)
Type: TF
Location: 130287 - 131219 (+)
Gene ID: HRGMv2_3780_6_108
Type: CAZyme
Location: 131260 - 132231 (-)
Type: CAZyme
Location: 131260 - 132231 (-)
Gene ID: HRGMv2_3780_6_109
Type:
Location: 132427 - 133242 (+)
Type:
Location: 132427 - 133242 (+)
Gene ID: HRGMv2_3780_6_110
Type: TF
Location: 133336 - 134445 (+)
Type: TF
Location: 133336 - 134445 (+)
Gene ID: HRGMv2_3780_6_111
Type: CAZyme
Location: 134499 - 137042 (+)
Type: CAZyme
Location: 134499 - 137042 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Lentisphaeria
Order
Victivallales
Family
UBA1829
Genus
UBA1829
Species
UBA1829 sp900548385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.