Cluster: HRGMv2_3780_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3780
- CGC Family ID: CGCFAM_03288
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3780_6 | HRGMv2_3780_6_26 | 24813 | 25595 | - | 2.A.64.1.3 |
| pfam | HRGMv2_3780_6 | HRGMv2_3780_6_27 | 25604 | 25834 | - | TatA_B_E |
| NULL(UNKNOWN) | HRGMv2_3780_6 | HRGMv2_3780_6_28 | 25908 | 27035 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3780_6 | HRGMv2_3780_6_29 | 27047 | 28195 | - | GT4 |
| pfam | HRGMv2_3780_6 | HRGMv2_3780_6_30 | 28266 | 28931 | - | CpXC |
| CAZyme | HRGMv2_3780_6 | HRGMv2_3780_6_31 | 28904 | 30499 | - | GT2 |
Gene ID: HRGMv2_3780_6_26
Type: TC
Location: 24813 - 25595 (-)
Type: TC
Location: 24813 - 25595 (-)
Gene ID: HRGMv2_3780_6_27
Type: pfam
Location: 25604 - 25834 (-)
Type: pfam
Location: 25604 - 25834 (-)
Gene ID: HRGMv2_3780_6_28
Type:
Location: 25908 - 27035 (-)
Type:
Location: 25908 - 27035 (-)
Gene ID: HRGMv2_3780_6_29
Type: CAZyme
Location: 27047 - 28195 (-)
Type: CAZyme
Location: 27047 - 28195 (-)
Gene ID: HRGMv2_3780_6_30
Type: pfam
Location: 28266 - 28931 (-)
Type: pfam
Location: 28266 - 28931 (-)
Gene ID: HRGMv2_3780_6_31
Type: CAZyme
Location: 28904 - 30499 (-)
Type: CAZyme
Location: 28904 - 30499 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Lentisphaeria
Order
Victivallales
Family
UBA1829
Genus
UBA1829
Species
UBA1829 sp900548385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.