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Cluster: HRGMv2_3780_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3780_1 HRGMv2_3780_1_121 141720 144926 + GH148
TF HRGMv2_3780_1 HRGMv2_3780_1_122 144970 145836 - HTH_AraC
CAZyme HRGMv2_3780_1 HRGMv2_3780_1_123 145974 147320 + GH13
pfam HRGMv2_3780_1 HRGMv2_3780_1_124 147557 147814 + TM1266-like
pfam HRGMv2_3780_1 HRGMv2_3780_1_125 147833 149251 + Radical_SAM | BATS
TC HRGMv2_3780_1 HRGMv2_3780_1_126 149300 149884 + 1.C.113.1.1
pfam HRGMv2_3780_1 HRGMv2_3780_1_127 149886 150743 - DUF3379
STP HRGMv2_3780_1 HRGMv2_3780_1_128 150809 151432 - Sigma70_r2 | Sigma70_r4_2
CAZyme HRGMv2_3780_1 HRGMv2_3780_1_129 151759 153948 + GH36
Gene ID: HRGMv2_3780_1_121
Type: CAZyme
Location: 141720 - 144926 (+)
Gene ID: HRGMv2_3780_1_122
Type: TF
Location: 144970 - 145836 (-)
Gene ID: HRGMv2_3780_1_123
Type: CAZyme
Location: 145974 - 147320 (+)
Gene ID: HRGMv2_3780_1_124
Type: pfam
Location: 147557 - 147814 (+)
Gene ID: HRGMv2_3780_1_125
Type: pfam
Location: 147833 - 149251 (+)
Gene ID: HRGMv2_3780_1_126
Type: TC
Location: 149300 - 149884 (+)
Gene ID: HRGMv2_3780_1_127
Type: pfam
Location: 149886 - 150743 (-)
Gene ID: HRGMv2_3780_1_128
Type: STP
Location: 150809 - 151432 (-)
Gene ID: HRGMv2_3780_1_129
Type: CAZyme
Location: 151759 - 153948 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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