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Cluster: HRGMv2_3777_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3777_20 HRGMv2_3777_20_2 616 2388 + GH35
pfam HRGMv2_3777_20 HRGMv2_3777_20_3 2968 4203 - PGA_cap
TC HRGMv2_3777_20 HRGMv2_3777_20_4 4315 5484 - 2.A.4.7.4
TC HRGMv2_3777_20 HRGMv2_3777_20_5 5808 6374 - 3.A.3.7.2
TC HRGMv2_3777_20 HRGMv2_3777_20_6 6394 8451 - 3.A.3.7.2
TC HRGMv2_3777_20 HRGMv2_3777_20_7 8468 10153 - 3.A.3.7.2
NULL(UNKNOWN) HRGMv2_3777_20 HRGMv2_3777_20_8 10260 10349 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_3777_20 HRGMv2_3777_20_9 10391 10906 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3777_20 HRGMv2_3777_20_10 10820 12016 - 2.A.1.2.69
STP HRGMv2_3777_20 HRGMv2_3777_20_11 12134 12811 - TetR_N
CAZyme HRGMv2_3777_20 HRGMv2_3777_20_12 13198 14076 - CE4
Gene ID: HRGMv2_3777_20_2
Type: CAZyme
Location: 616 - 2388 (+)
Gene ID: HRGMv2_3777_20_3
Type: pfam
Location: 2968 - 4203 (-)
Gene ID: HRGMv2_3777_20_4
Type: TC
Location: 4315 - 5484 (-)
Gene ID: HRGMv2_3777_20_5
Type: TC
Location: 5808 - 6374 (-)
Gene ID: HRGMv2_3777_20_6
Type: TC
Location: 6394 - 8451 (-)
Gene ID: HRGMv2_3777_20_7
Type: TC
Location: 8468 - 10153 (-)
Gene ID: HRGMv2_3777_20_8
Type:
Location: 10260 - 10349 (-)
Gene ID: HRGMv2_3777_20_9
Type:
Location: 10391 - 10906 (+)
Gene ID: HRGMv2_3777_20_10
Type: TC
Location: 10820 - 12016 (-)
Gene ID: HRGMv2_3777_20_11
Type: STP
Location: 12134 - 12811 (-)
Gene ID: HRGMv2_3777_20_12
Type: CAZyme
Location: 13198 - 14076 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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