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Cluster: HRGMv2_3777_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3777_29 HRGMv2_3777_29_10 12421 13155 - 9.B.143.2.3
TC HRGMv2_3777_29 HRGMv2_3777_29_11 13496 14941 - 9.B.18.1.2
NULL(UNKNOWN) HRGMv2_3777_29 HRGMv2_3777_29_12 14938 15693 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3777_29 HRGMv2_3777_29_13 15703 16491 - PMT_2
CAZyme HRGMv2_3777_29 HRGMv2_3777_29_14 16500 17579 - GT4
pfam HRGMv2_3777_29 HRGMv2_3777_29_15 17591 18916 - CusB_dom_1 | HlyD_3 | Biotin_lipoyl_2
TC HRGMv2_3777_29 HRGMv2_3777_29_16 18913 21468 - 3.A.1.109.2
Gene ID: HRGMv2_3777_29_10
Type: TC
Location: 12421 - 13155 (-)
Gene ID: HRGMv2_3777_29_11
Type: TC
Location: 13496 - 14941 (-)
Gene ID: HRGMv2_3777_29_12
Type:
Location: 14938 - 15693 (-)
Gene ID: HRGMv2_3777_29_13
Type: pfam
Location: 15703 - 16491 (-)
Gene ID: HRGMv2_3777_29_14
Type: CAZyme
Location: 16500 - 17579 (-)
Gene ID: HRGMv2_3777_29_15
Type: pfam
Location: 17591 - 18916 (-)
Gene ID: HRGMv2_3777_29_16
Type: TC
Location: 18913 - 21468 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3777_29_10 vegetarian > vegan 1.75811 0.02034

🧭 Explore Read Mapping of CGC

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