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Cluster: HRGMv2_3777_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3777_4 HRGMv2_3777_4_12 10378 11775 + 3.A.2.3.3
TC HRGMv2_3777_4 HRGMv2_3777_4_13 11772 12107 + 3.A.2.3.3
TC HRGMv2_3777_4 HRGMv2_3777_4_14 12100 13401 + 3.A.2.3.3
TC HRGMv2_3777_4 HRGMv2_3777_4_15 13419 14027 + 3.A.2.3.3
TC HRGMv2_3777_4 HRGMv2_3777_4_16 14024 15874 + 3.A.2.3.3
TC HRGMv2_3777_4 HRGMv2_3777_4_17 15907 16452 + 3.A.2.3.3
pfam HRGMv2_3777_4 HRGMv2_3777_4_18 16528 17448 + Epimerase | Epimerase
NULL(UNKNOWN) HRGMv2_3777_4 HRGMv2_3777_4_19 17491 18699 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3777_4 HRGMv2_3777_4_20 18714 20759 - GH151
TF HRGMv2_3777_4 HRGMv2_3777_4_21 20878 21792 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_3777_4 HRGMv2_3777_4_22 21900 22697 - CBM9
TF HRGMv2_3777_4 HRGMv2_3777_4_23 22915 23922 + LacI
pfam HRGMv2_3777_4 HRGMv2_3777_4_24 23965 24654 + N_methyl
CAZyme HRGMv2_3777_4 HRGMv2_3777_4_25 24841 27018 + GH163
NULL(UNKNOWN) HRGMv2_3777_4 HRGMv2_3777_4_26 27363 27713 + NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_3777_4 HRGMv2_3777_4_27 28192 29016 - S09.UPW
TC HRGMv2_3777_4 HRGMv2_3777_4_28 29028 30341 - 2.A.1.54.2
Gene ID: HRGMv2_3777_4_12
Type: TC
Location: 10378 - 11775 (+)
Gene ID: HRGMv2_3777_4_13
Type: TC
Location: 11772 - 12107 (+)
Gene ID: HRGMv2_3777_4_14
Type: TC
Location: 12100 - 13401 (+)
Gene ID: HRGMv2_3777_4_15
Type: TC
Location: 13419 - 14027 (+)
Gene ID: HRGMv2_3777_4_16
Type: TC
Location: 14024 - 15874 (+)
Gene ID: HRGMv2_3777_4_17
Type: TC
Location: 15907 - 16452 (+)
Gene ID: HRGMv2_3777_4_18
Type: pfam
Location: 16528 - 17448 (+)
Gene ID: HRGMv2_3777_4_19
Type:
Location: 17491 - 18699 (-)
Gene ID: HRGMv2_3777_4_20
Type: CAZyme
Location: 18714 - 20759 (-)
Gene ID: HRGMv2_3777_4_21
Type: TF
Location: 20878 - 21792 (+)
Gene ID: HRGMv2_3777_4_22
Type: CAZyme
Location: 21900 - 22697 (-)
Gene ID: HRGMv2_3777_4_23
Type: TF
Location: 22915 - 23922 (+)
Gene ID: HRGMv2_3777_4_24
Type: pfam
Location: 23965 - 24654 (+)
Gene ID: HRGMv2_3777_4_25
Type: CAZyme
Location: 24841 - 27018 (+)
Gene ID: HRGMv2_3777_4_26
Type:
Location: 27363 - 27713 (+)
Gene ID: HRGMv2_3777_4_27
Type: peptidase
Location: 28192 - 29016 (-)
Gene ID: HRGMv2_3777_4_28
Type: TC
Location: 29028 - 30341 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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