Cluster: HRGMv2_3767_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3767
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3767_3 | HRGMv2_3767_3_4 | 3447 | 5003 | + | GH20 |
| pfam | HRGMv2_3767_3 | HRGMv2_3767_3_5 | 5125 | 6540 | + | tRNA-synt_1e | DALR_2 | CysS_C |
| STP | HRGMv2_3767_3 | HRGMv2_3767_3_6 | 6546 | 6890 | + | AraC_binding |
| TC | HRGMv2_3767_3 | HRGMv2_3767_3_7 | 6887 | 7822 | + | 2.A.7.3.36 |
| TC | HRGMv2_3767_3 | HRGMv2_3767_3_8 | 8038 | 10032 | - | 3.A.1.121.4 |
| TC | HRGMv2_3767_3 | HRGMv2_3767_3_9 | 10115 | 10618 | - | 3.D.1.8.1 |
Gene ID: HRGMv2_3767_3_4
Type: CAZyme
Location: 3447 - 5003 (+)
Type: CAZyme
Location: 3447 - 5003 (+)
Gene ID: HRGMv2_3767_3_5
Type: pfam
Location: 5125 - 6540 (+)
Type: pfam
Location: 5125 - 6540 (+)
Gene ID: HRGMv2_3767_3_6
Type: STP
Location: 6546 - 6890 (+)
Type: STP
Location: 6546 - 6890 (+)
Gene ID: HRGMv2_3767_3_7
Type: TC
Location: 6887 - 7822 (+)
Type: TC
Location: 6887 - 7822 (+)
Gene ID: HRGMv2_3767_3_8
Type: TC
Location: 8038 - 10032 (-)
Type: TC
Location: 8038 - 10032 (-)
Gene ID: HRGMv2_3767_3_9
Type: TC
Location: 10115 - 10618 (-)
Type: TC
Location: 10115 - 10618 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.