Cluster: HRGMv2_3767_CGC32
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3767
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3767_14 | HRGMv2_3767_14_20 | 22255 | 23358 | + | 9.B.146.1.3 |
| pfam | HRGMv2_3767_14 | HRGMv2_3767_14_21 | 23364 | 24680 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| pfam | HRGMv2_3767_14 | HRGMv2_3767_14_22 | 24708 | 25508 | + | LysM | LysM |
| TC | HRGMv2_3767_14 | HRGMv2_3767_14_23 | 25536 | 26678 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_3767_14 | HRGMv2_3767_14_24 | 26675 | 27799 | + | GT28 |
Gene ID: HRGMv2_3767_14_20
Type: TC
Location: 22255 - 23358 (+)
Type: TC
Location: 22255 - 23358 (+)
Gene ID: HRGMv2_3767_14_21
Type: pfam
Location: 23364 - 24680 (+)
Type: pfam
Location: 23364 - 24680 (+)
Gene ID: HRGMv2_3767_14_22
Type: pfam
Location: 24708 - 25508 (+)
Type: pfam
Location: 24708 - 25508 (+)
Gene ID: HRGMv2_3767_14_23
Type: TC
Location: 25536 - 26678 (+)
Type: TC
Location: 25536 - 26678 (+)
Gene ID: HRGMv2_3767_14_24
Type: CAZyme
Location: 26675 - 27799 (+)
Type: CAZyme
Location: 26675 - 27799 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.