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Cluster: HRGMv2_3767_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3767_12 HRGMv2_3767_12_41 51403 52431 - GT2
CAZyme HRGMv2_3767_12 HRGMv2_3767_12_42 52551 53555 - GT2
CAZyme HRGMv2_3767_12 HRGMv2_3767_12_43 53578 54426 - GT2
NULL(UNKNOWN) HRGMv2_3767_12 HRGMv2_3767_12_44 54430 54969 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_3767_12 HRGMv2_3767_12_45 55002 56582 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3767_12 HRGMv2_3767_12_46 56604 57779 - GT4
CAZyme HRGMv2_3767_12 HRGMv2_3767_12_47 57776 58915 - GT4
CAZyme HRGMv2_3767_12 HRGMv2_3767_12_48 58915 59958 - GT4
CAZyme HRGMv2_3767_12 HRGMv2_3767_12_49 59961 60797 - GT11
pfam HRGMv2_3767_12 HRGMv2_3767_12_50 60787 61926 - Wzy_C
NULL(UNKNOWN) HRGMv2_3767_12 HRGMv2_3767_12_51 61967 62932 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3767_12 HRGMv2_3767_12_52 62929 64101 - GT4
CAZyme HRGMv2_3767_12 HRGMv2_3767_12_53 64136 65314 - GT4
CAZyme HRGMv2_3767_12 HRGMv2_3767_12_54 65311 66465 - GT4
CAZyme HRGMv2_3767_12 HRGMv2_3767_12_55 66508 67284 - GT2
pfam HRGMv2_3767_12 HRGMv2_3767_12_56 67308 67913 - CpsB_CapC
TC HRGMv2_3767_12 HRGMv2_3767_12_57 67980 70346 - 8.A.3.1.2
TC HRGMv2_3767_12 HRGMv2_3767_12_58 70418 71200 - 1.B.18.3.8
TC HRGMv2_3767_12 HRGMv2_3767_12_59 71197 71889 - 9.B.18.1.2
TC HRGMv2_3767_12 HRGMv2_3767_12_60 72496 74952 + 3.A.12.1.1
NULL(UNKNOWN) HRGMv2_3767_12 HRGMv2_3767_12_61 74949 75596 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3767_12 HRGMv2_3767_12_62 75681 76256 + Ferritin | Rubrerythrin | RUBY_RBDX
TC HRGMv2_3767_12 HRGMv2_3767_12_63 76345 78996 + 9.B.14.3.3
Gene ID: HRGMv2_3767_12_41
Type: CAZyme
Location: 51403 - 52431 (-)
Gene ID: HRGMv2_3767_12_42
Type: CAZyme
Location: 52551 - 53555 (-)
Gene ID: HRGMv2_3767_12_43
Type: CAZyme
Location: 53578 - 54426 (-)
Gene ID: HRGMv2_3767_12_44
Type:
Location: 54430 - 54969 (-)
Gene ID: HRGMv2_3767_12_45
Type:
Location: 55002 - 56582 (-)
Gene ID: HRGMv2_3767_12_46
Type: CAZyme
Location: 56604 - 57779 (-)
Gene ID: HRGMv2_3767_12_47
Type: CAZyme
Location: 57776 - 58915 (-)
Gene ID: HRGMv2_3767_12_48
Type: CAZyme
Location: 58915 - 59958 (-)
Gene ID: HRGMv2_3767_12_49
Type: CAZyme
Location: 59961 - 60797 (-)
Gene ID: HRGMv2_3767_12_50
Type: pfam
Location: 60787 - 61926 (-)
Gene ID: HRGMv2_3767_12_51
Type:
Location: 61967 - 62932 (-)
Gene ID: HRGMv2_3767_12_52
Type: CAZyme
Location: 62929 - 64101 (-)
Gene ID: HRGMv2_3767_12_53
Type: CAZyme
Location: 64136 - 65314 (-)
Gene ID: HRGMv2_3767_12_54
Type: CAZyme
Location: 65311 - 66465 (-)
Gene ID: HRGMv2_3767_12_55
Type: CAZyme
Location: 66508 - 67284 (-)
Gene ID: HRGMv2_3767_12_56
Type: pfam
Location: 67308 - 67913 (-)
Gene ID: HRGMv2_3767_12_57
Type: TC
Location: 67980 - 70346 (-)
Gene ID: HRGMv2_3767_12_58
Type: TC
Location: 70418 - 71200 (-)
Gene ID: HRGMv2_3767_12_59
Type: TC
Location: 71197 - 71889 (-)
Gene ID: HRGMv2_3767_12_60
Type: TC
Location: 72496 - 74952 (+)
Gene ID: HRGMv2_3767_12_61
Type:
Location: 74949 - 75596 (+)
Gene ID: HRGMv2_3767_12_62
Type: pfam
Location: 75681 - 76256 (+)
Gene ID: HRGMv2_3767_12_63
Type: TC
Location: 76345 - 78996 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3767_12_47 vegetarian > vegan 1.21426 0.02077
HRGMv2_3767_12_55 vegan > omnivore 2.18478 0.03762

🧭 Explore Read Mapping of CGC

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