Cluster: HRGMv2_3767_CGC27
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3767
- CGC Family ID: CGCFAM_04973
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3767_9 | HRGMv2_3767_9_26 | 32844 | 33293 | - | 2.A.7.1.11 |
| pfam | HRGMv2_3767_9 | HRGMv2_3767_9_27 | 33336 | 34559 | - | Sacchrp_dh_NADP | Sacchrp_dh_C |
| pfam | HRGMv2_3767_9 | HRGMv2_3767_9_28 | 34772 | 35737 | + | Thioredoxin | Thioredoxin_2 | Thioredoxin_7 |
| CAZyme | HRGMv2_3767_9 | HRGMv2_3767_9_29 | 36094 | 37026 | - | GH29 |
| pfam | HRGMv2_3767_9 | HRGMv2_3767_9_30 | 37864 | 38238 | + | PEP-CTERM |
| TC | HRGMv2_3767_9 | HRGMv2_3767_9_31 | 38576 | 40435 | + | 3.A.1.5.18 |
| TC | HRGMv2_3767_9 | HRGMv2_3767_9_32 | 40441 | 41355 | + | 3.A.1.5.1 |
| TC | HRGMv2_3767_9 | HRGMv2_3767_9_33 | 41352 | 42308 | + | 3.A.1.5.22 |
| TC | HRGMv2_3767_9 | HRGMv2_3767_9_34 | 42352 | 42690 | + | 2.A.7.34.1 |
| NULL(UNKNOWN) | HRGMv2_3767_9 | HRGMv2_3767_9_35 | 42744 | 43001 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3767_9 | HRGMv2_3767_9_36 | 43283 | 44434 | + | tRNA-synt_1b |
| TC | HRGMv2_3767_9 | HRGMv2_3767_9_37 | 44471 | 45451 | + | 2.A.28.3.4 |
Gene ID: HRGMv2_3767_9_26
Type: TC
Location: 32844 - 33293 (-)
Type: TC
Location: 32844 - 33293 (-)
Gene ID: HRGMv2_3767_9_27
Type: pfam
Location: 33336 - 34559 (-)
Type: pfam
Location: 33336 - 34559 (-)
Gene ID: HRGMv2_3767_9_28
Type: pfam
Location: 34772 - 35737 (+)
Type: pfam
Location: 34772 - 35737 (+)
Gene ID: HRGMv2_3767_9_29
Type: CAZyme
Location: 36094 - 37026 (-)
Type: CAZyme
Location: 36094 - 37026 (-)
Gene ID: HRGMv2_3767_9_30
Type: pfam
Location: 37864 - 38238 (+)
Type: pfam
Location: 37864 - 38238 (+)
Gene ID: HRGMv2_3767_9_31
Type: TC
Location: 38576 - 40435 (+)
Type: TC
Location: 38576 - 40435 (+)
Gene ID: HRGMv2_3767_9_32
Type: TC
Location: 40441 - 41355 (+)
Type: TC
Location: 40441 - 41355 (+)
Gene ID: HRGMv2_3767_9_33
Type: TC
Location: 41352 - 42308 (+)
Type: TC
Location: 41352 - 42308 (+)
Gene ID: HRGMv2_3767_9_34
Type: TC
Location: 42352 - 42690 (+)
Type: TC
Location: 42352 - 42690 (+)
Gene ID: HRGMv2_3767_9_35
Type:
Location: 42744 - 43001 (+)
Type:
Location: 42744 - 43001 (+)
Gene ID: HRGMv2_3767_9_36
Type: pfam
Location: 43283 - 44434 (+)
Type: pfam
Location: 43283 - 44434 (+)
Gene ID: HRGMv2_3767_9_37
Type: TC
Location: 44471 - 45451 (+)
Type: TC
Location: 44471 - 45451 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.