Cluster: HRGMv2_3767_CGC25
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3767
- CGC Family ID: CGCFAM_00143
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3767_8 | HRGMv2_3767_8_31 | 40108 | 42039 | - | GH97 |
| pfam | HRGMv2_3767_8 | HRGMv2_3767_8_32 | 42227 | 45454 | - | DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter |
| pfam | HRGMv2_3767_8 | HRGMv2_3767_8_33 | 45529 | 46713 | - | SHD1 |
| TC | HRGMv2_3767_8 | HRGMv2_3767_8_34 | 46751 | 49303 | - | 2.A.1.49.7 |
Gene ID: HRGMv2_3767_8_31
Type: CAZyme
Location: 40108 - 42039 (-)
Type: CAZyme
Location: 40108 - 42039 (-)
Gene ID: HRGMv2_3767_8_32
Type: pfam
Location: 42227 - 45454 (-)
Type: pfam
Location: 42227 - 45454 (-)
Gene ID: HRGMv2_3767_8_33
Type: pfam
Location: 45529 - 46713 (-)
Type: pfam
Location: 45529 - 46713 (-)
Gene ID: HRGMv2_3767_8_34
Type: TC
Location: 46751 - 49303 (-)
Type: TC
Location: 46751 - 49303 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.