Cluster: HRGMv2_3767_CGC20
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_3767
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3767_6 | HRGMv2_3767_6_76 | 97293 | 99158 | + | 2.A.47.4.8 |
| NULL(UNKNOWN) | HRGMv2_3767_6 | HRGMv2_3767_6_77 | 99285 | 99518 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3767_6 | HRGMv2_3767_6_78 | 99589 | 100116 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3767_6 | HRGMv2_3767_6_79 | 100156 | 101274 | - | GT10 |
| TC | HRGMv2_3767_6 | HRGMv2_3767_6_80 | 101347 | 103422 | - | 9.B.97.5.1 |
| CAZyme | HRGMv2_3767_6 | HRGMv2_3767_6_81 | 103512 | 104510 | - | GT10 |
| CAZyme | HRGMv2_3767_6 | HRGMv2_3767_6_82 | 104633 | 105907 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_3767_6 | HRGMv2_3767_6_83 | 106171 | 106977 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3767_6 | HRGMv2_3767_6_84 | 106990 | 108144 | - | GT2 |
| pfam | HRGMv2_3767_6 | HRGMv2_3767_6_85 | 108446 | 109432 | + | 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | HRGMv2_3767_6 | HRGMv2_3767_6_86 | 109453 | 110427 | + | GT9 |
| CAZyme | HRGMv2_3767_6 | HRGMv2_3767_6_87 | 110424 | 111449 | + | GT2 |
| CAZyme | HRGMv2_3767_6 | HRGMv2_3767_6_88 | 111473 | 112447 | + | GT8 |
Gene ID: HRGMv2_3767_6_76
Type: TC
Location: 97293 - 99158 (+)
Type: TC
Location: 97293 - 99158 (+)
Gene ID: HRGMv2_3767_6_77
Type:
Location: 99285 - 99518 (+)
Type:
Location: 99285 - 99518 (+)
Gene ID: HRGMv2_3767_6_78
Type:
Location: 99589 - 100116 (+)
Type:
Location: 99589 - 100116 (+)
Gene ID: HRGMv2_3767_6_79
Type: CAZyme
Location: 100156 - 101274 (-)
Type: CAZyme
Location: 100156 - 101274 (-)
Gene ID: HRGMv2_3767_6_80
Type: TC
Location: 101347 - 103422 (-)
Type: TC
Location: 101347 - 103422 (-)
Gene ID: HRGMv2_3767_6_81
Type: CAZyme
Location: 103512 - 104510 (-)
Type: CAZyme
Location: 103512 - 104510 (-)
Gene ID: HRGMv2_3767_6_82
Type: CAZyme
Location: 104633 - 105907 (-)
Type: CAZyme
Location: 104633 - 105907 (-)
Gene ID: HRGMv2_3767_6_83
Type:
Location: 106171 - 106977 (-)
Type:
Location: 106171 - 106977 (-)
Gene ID: HRGMv2_3767_6_84
Type: CAZyme
Location: 106990 - 108144 (-)
Type: CAZyme
Location: 106990 - 108144 (-)
Gene ID: HRGMv2_3767_6_85
Type: pfam
Location: 108446 - 109432 (+)
Type: pfam
Location: 108446 - 109432 (+)
Gene ID: HRGMv2_3767_6_86
Type: CAZyme
Location: 109453 - 110427 (+)
Type: CAZyme
Location: 109453 - 110427 (+)
Gene ID: HRGMv2_3767_6_87
Type: CAZyme
Location: 110424 - 111449 (+)
Type: CAZyme
Location: 110424 - 111449 (+)
Gene ID: HRGMv2_3767_6_88
Type: CAZyme
Location: 111473 - 112447 (+)
Type: CAZyme
Location: 111473 - 112447 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.