Cluster: HRGMv2_3767_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3767
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3767_3 | HRGMv2_3767_3_167 | 189003 | 189797 | - | GT26 |
| pfam | HRGMv2_3767_3 | HRGMv2_3767_3_168 | 189849 | 190634 | - | Lactamase_B | Lactamase_B_2 | Lactamase_B_3 |
| pfam | HRGMv2_3767_3 | HRGMv2_3767_3_169 | 190687 | 192345 | + | SMC_N | AAA_23 |
| TC | HRGMv2_3767_3 | HRGMv2_3767_3_170 | 192374 | 194611 | - | 3.A.3.5.15 |
| CAZyme | HRGMv2_3767_3 | HRGMv2_3767_3_171 | 194793 | 195785 | + | GH16_3 |
Gene ID: HRGMv2_3767_3_167
Type: CAZyme
Location: 189003 - 189797 (-)
Type: CAZyme
Location: 189003 - 189797 (-)
Gene ID: HRGMv2_3767_3_168
Type: pfam
Location: 189849 - 190634 (-)
Type: pfam
Location: 189849 - 190634 (-)
Gene ID: HRGMv2_3767_3_169
Type: pfam
Location: 190687 - 192345 (+)
Type: pfam
Location: 190687 - 192345 (+)
Gene ID: HRGMv2_3767_3_170
Type: TC
Location: 192374 - 194611 (-)
Type: TC
Location: 192374 - 194611 (-)
Gene ID: HRGMv2_3767_3_171
Type: CAZyme
Location: 194793 - 195785 (+)
Type: CAZyme
Location: 194793 - 195785 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.