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Cluster: HRGMv2_3756_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3756_2 HRGMv2_3756_2_31 28511 29137 - 1.A.30.2.9
TC HRGMv2_3756_2 HRGMv2_3756_2_32 29266 31152 - 1.B.14.8.2
STP HRGMv2_3756_2 HRGMv2_3756_2_33 31256 32278 - Peripla_BP_2
TC HRGMv2_3756_2 HRGMv2_3756_2_34 32271 33092 - 3.A.1.14.7
TC HRGMv2_3756_2 HRGMv2_3756_2_35 33094 34131 - 3.A.1.14.9
TC HRGMv2_3756_2 HRGMv2_3756_2_36 34619 36772 - 1.B.14.1.11
pfam HRGMv2_3756_2 HRGMv2_3756_2_37 37181 38122 - PMSR | SelR
pfam HRGMv2_3756_2 HRGMv2_3756_2_38 38653 39402 - SurE
CAZyme HRGMv2_3756_2 HRGMv2_3756_2_39 39453 40733 - GT2
pfam HRGMv2_3756_2 HRGMv2_3756_2_40 40749 41423 - CDP-OH_P_transf
pfam HRGMv2_3756_2 HRGMv2_3756_2_41 41416 42069 - PS_Dcarbxylase
CAZyme HRGMv2_3756_2 HRGMv2_3756_2_42 42084 42809 - GT26
Gene ID: HRGMv2_3756_2_31
Type: TC
Location: 28511 - 29137 (-)
Gene ID: HRGMv2_3756_2_32
Type: TC
Location: 29266 - 31152 (-)
Gene ID: HRGMv2_3756_2_33
Type: STP
Location: 31256 - 32278 (-)
Gene ID: HRGMv2_3756_2_34
Type: TC
Location: 32271 - 33092 (-)
Gene ID: HRGMv2_3756_2_35
Type: TC
Location: 33094 - 34131 (-)
Gene ID: HRGMv2_3756_2_36
Type: TC
Location: 34619 - 36772 (-)
Gene ID: HRGMv2_3756_2_37
Type: pfam
Location: 37181 - 38122 (-)
Gene ID: HRGMv2_3756_2_38
Type: pfam
Location: 38653 - 39402 (-)
Gene ID: HRGMv2_3756_2_39
Type: CAZyme
Location: 39453 - 40733 (-)
Gene ID: HRGMv2_3756_2_40
Type: pfam
Location: 40749 - 41423 (-)
Gene ID: HRGMv2_3756_2_41
Type: pfam
Location: 41416 - 42069 (-)
Gene ID: HRGMv2_3756_2_42
Type: CAZyme
Location: 42084 - 42809 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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