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Cluster: HRGMv2_3740_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3740_35 HRGMv2_3740_35_11 11307 12287 + 3.A.1.4.10
TC HRGMv2_3740_35 HRGMv2_3740_35_12 12287 13249 + 3.A.1.4.8
TC HRGMv2_3740_35 HRGMv2_3740_35_13 13249 14013 + 3.A.1.4.10
TC HRGMv2_3740_35 HRGMv2_3740_35_14 14013 14732 + 3.A.1.4.10
sulfatase HRGMv2_3740_35 HRGMv2_3740_35_15 15204 17783 + S1_2
pfam HRGMv2_3740_35 HRGMv2_3740_35_16 18193 18819 + CoaE
CAZyme HRGMv2_3740_35 HRGMv2_3740_35_17 18816 19412 + GH23
NULL(UNKNOWN) HRGMv2_3740_35 HRGMv2_3740_35_18 19413 20108 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_3740_35 HRGMv2_3740_35_19 20515 20667 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3740_35 HRGMv2_3740_35_20 20783 21313 + 1.B.14.3.1
Gene ID: HRGMv2_3740_35_11
Type: TC
Location: 11307 - 12287 (+)
Gene ID: HRGMv2_3740_35_12
Type: TC
Location: 12287 - 13249 (+)
Gene ID: HRGMv2_3740_35_13
Type: TC
Location: 13249 - 14013 (+)
Gene ID: HRGMv2_3740_35_14
Type: TC
Location: 14013 - 14732 (+)
Gene ID: HRGMv2_3740_35_15
Type: sulfatase
Location: 15204 - 17783 (+)
Gene ID: HRGMv2_3740_35_16
Type: pfam
Location: 18193 - 18819 (+)
Gene ID: HRGMv2_3740_35_17
Type: CAZyme
Location: 18816 - 19412 (+)
Gene ID: HRGMv2_3740_35_18
Type:
Location: 19413 - 20108 (+)
Gene ID: HRGMv2_3740_35_19
Type:
Location: 20515 - 20667 (+)
Gene ID: HRGMv2_3740_35_20
Type: TC
Location: 20783 - 21313 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3740_35_12 vegan > omnivore 1.12262 0.04488
HRGMv2_3740_35_17 vegan > omnivore 3.20122 0.04488
HRGMv2_3740_35_17 vegetarian > omnivore 2.93756 0.00565

🧭 Explore Read Mapping of CGC

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