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Cluster: HRGMv2_3735_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3735_26 HRGMv2_3735_26_15 10018 10602 - 2.A.23.2.4
TC HRGMv2_3735_26 HRGMv2_3735_26_16 10639 11247 - 2.A.23.1.7
STP HRGMv2_3735_26 HRGMv2_3735_26_17 11237 12298 - Aminotran_1_2
TC HRGMv2_3735_26 HRGMv2_3735_26_18 12798 14609 + 2.A.3.14.3
CAZyme HRGMv2_3735_26 HRGMv2_3735_26_19 14732 15361 - GH25
pfam HRGMv2_3735_26 HRGMv2_3735_26_20 15750 16547 + Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
TC HRGMv2_3735_26 HRGMv2_3735_26_21 16827 17483 + 3.A.1.139.2
TC HRGMv2_3735_26 HRGMv2_3735_26_22 17480 18244 + 3.A.1.139.2
TC HRGMv2_3735_26 HRGMv2_3735_26_23 18443 19270 - 3.A.1.3.2
Gene ID: HRGMv2_3735_26_15
Type: TC
Location: 10018 - 10602 (-)
Gene ID: HRGMv2_3735_26_16
Type: TC
Location: 10639 - 11247 (-)
Gene ID: HRGMv2_3735_26_17
Type: STP
Location: 11237 - 12298 (-)
Gene ID: HRGMv2_3735_26_18
Type: TC
Location: 12798 - 14609 (+)
Gene ID: HRGMv2_3735_26_19
Type: CAZyme
Location: 14732 - 15361 (-)
Gene ID: HRGMv2_3735_26_20
Type: pfam
Location: 15750 - 16547 (+)
Gene ID: HRGMv2_3735_26_21
Type: TC
Location: 16827 - 17483 (+)
Gene ID: HRGMv2_3735_26_22
Type: TC
Location: 17480 - 18244 (+)
Gene ID: HRGMv2_3735_26_23
Type: TC
Location: 18443 - 19270 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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