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Cluster: HRGMv2_3730_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3730_2 HRGMv2_3730_2_121 113151 114263 + GT28
TC HRGMv2_3730_2 HRGMv2_3730_2_122 114378 115721 + 2.A.38.4.3
TC HRGMv2_3730_2 HRGMv2_3730_2_123 115733 116392 + 2.A.38.4.6
STP HRGMv2_3730_2 HRGMv2_3730_2_124 116519 117781 + EPSP_synthase
TC HRGMv2_3730_2 HRGMv2_3730_2_125 117765 118853 + 9.B.157.1.1
pfam HRGMv2_3730_2 HRGMv2_3730_2_126 118986 119276 + Biotin_lipoyl | Biotin_lipoyl_2
peptidase HRGMv2_3730_2 HRGMv2_3730_2_127 119285 121213 + S55.UNW
TC HRGMv2_3730_2 HRGMv2_3730_2_128 121495 122259 + 3.A.1.27.2
TC HRGMv2_3730_2 HRGMv2_3730_2_129 122267 123031 + 3.A.1.27.2
pfam HRGMv2_3730_2 HRGMv2_3730_2_130 123028 124176 + MlaD
TC HRGMv2_3730_2 HRGMv2_3730_2_131 124213 125679 + 1.B.17.2.6
Gene ID: HRGMv2_3730_2_121
Type: CAZyme
Location: 113151 - 114263 (+)
Gene ID: HRGMv2_3730_2_122
Type: TC
Location: 114378 - 115721 (+)
Gene ID: HRGMv2_3730_2_123
Type: TC
Location: 115733 - 116392 (+)
Gene ID: HRGMv2_3730_2_124
Type: STP
Location: 116519 - 117781 (+)
Gene ID: HRGMv2_3730_2_125
Type: TC
Location: 117765 - 118853 (+)
Gene ID: HRGMv2_3730_2_126
Type: pfam
Location: 118986 - 119276 (+)
Gene ID: HRGMv2_3730_2_127
Type: peptidase
Location: 119285 - 121213 (+)
Gene ID: HRGMv2_3730_2_128
Type: TC
Location: 121495 - 122259 (+)
Gene ID: HRGMv2_3730_2_129
Type: TC
Location: 122267 - 123031 (+)
Gene ID: HRGMv2_3730_2_130
Type: pfam
Location: 123028 - 124176 (+)
Gene ID: HRGMv2_3730_2_131
Type: TC
Location: 124213 - 125679 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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