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Cluster: HRGMv2_3729_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3729_6 HRGMv2_3729_6_43 44623 45375 - 3.A.1.5.23
TC HRGMv2_3729_6 HRGMv2_3729_6_44 45539 46318 - 3.A.1.3.27
TC HRGMv2_3729_6 HRGMv2_3729_6_45 46494 47279 - 3.A.1.3.2
TC HRGMv2_3729_6 HRGMv2_3729_6_46 47611 48201 + 9.B.27.2.5
CAZyme HRGMv2_3729_6 HRGMv2_3729_6_47 48206 49723 + GT83
CAZyme HRGMv2_3729_6 HRGMv2_3729_6_48 49757 51346 + GT83
pfam HRGMv2_3729_6 HRGMv2_3729_6_49 51346 52065 + UDG
TC HRGMv2_3729_6 HRGMv2_3729_6_50 52164 52967 + 8.A.5.1.4
Gene ID: HRGMv2_3729_6_43
Type: TC
Location: 44623 - 45375 (-)
Gene ID: HRGMv2_3729_6_44
Type: TC
Location: 45539 - 46318 (-)
Gene ID: HRGMv2_3729_6_45
Type: TC
Location: 46494 - 47279 (-)
Gene ID: HRGMv2_3729_6_46
Type: TC
Location: 47611 - 48201 (+)
Gene ID: HRGMv2_3729_6_47
Type: CAZyme
Location: 48206 - 49723 (+)
Gene ID: HRGMv2_3729_6_48
Type: CAZyme
Location: 49757 - 51346 (+)
Gene ID: HRGMv2_3729_6_49
Type: pfam
Location: 51346 - 52065 (+)
Gene ID: HRGMv2_3729_6_50
Type: TC
Location: 52164 - 52967 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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