Cluster: HRGMv2_3724_CGC4
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3724
- CGC Family ID: CGCFAM_00394
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3724_23 | HRGMv2_3724_23_1 | 2 | 3130 | - | 1.B.14.1.4 |
| TF | HRGMv2_3724_23 | HRGMv2_3724_23_2 | 3403 | 4473 | - | HTH_AraC |
| pfam | HRGMv2_3724_23 | HRGMv2_3724_23_3 | 4598 | 4993 | - | DUF454 |
| TC | HRGMv2_3724_23 | HRGMv2_3724_23_4 | 4993 | 6360 | - | 4.A.7.1.4 |
| TC | HRGMv2_3724_23 | HRGMv2_3724_23_5 | 6392 | 6667 | - | 4.A.7.1.2 |
| TC | HRGMv2_3724_23 | HRGMv2_3724_23_6 | 6680 | 7144 | - | 4.A.7.1.1 |
| TC | HRGMv2_3724_23 | HRGMv2_3724_23_7 | 7502 | 8509 | + | 3.A.1.14.1 |
| TC | HRGMv2_3724_23 | HRGMv2_3724_23_8 | 8536 | 9282 | + | 3.A.1.14.8 |
| STP | HRGMv2_3724_23 | HRGMv2_3724_23_9 | 9302 | 10306 | + | Peripla_BP_2 |
| NULL(UNKNOWN) | HRGMv2_3724_23 | HRGMv2_3724_23_10 | 10543 | 10716 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3724_23 | HRGMv2_3724_23_11 | 11131 | 12129 | - | 2.A.20.1.5 |
| pfam | HRGMv2_3724_23 | HRGMv2_3724_23_12 | 12122 | 12751 | - | PhoU_div |
| STP | HRGMv2_3724_23 | HRGMv2_3724_23_13 | 13158 | 14627 | - | Fer4 |
| TC | HRGMv2_3724_23 | HRGMv2_3724_23_14 | 14760 | 16766 | - | 3.A.1.120.6 |
| NULL(UNKNOWN) | HRGMv2_3724_23 | HRGMv2_3724_23_15 | 16879 | 17199 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3724_23 | HRGMv2_3724_23_16 | 17343 | 18497 | - | GT28 |
| pfam | HRGMv2_3724_23 | HRGMv2_3724_23_17 | 18580 | 18879 | - | Bac_DNA_binding | HU-HIG |
| pfam | HRGMv2_3724_23 | HRGMv2_3724_23_18 | 18931 | 19713 | - | PRA-PH | MazG | MazG |
| TC | HRGMv2_3724_23 | HRGMv2_3724_23_19 | 19697 | 21304 | - | 2.A.66.2.14 |
Gene ID: HRGMv2_3724_23_1
Type: TC
Location: 2 - 3130 (-)
Type: TC
Location: 2 - 3130 (-)
Gene ID: HRGMv2_3724_23_2
Type: TF
Location: 3403 - 4473 (-)
Type: TF
Location: 3403 - 4473 (-)
Gene ID: HRGMv2_3724_23_3
Type: pfam
Location: 4598 - 4993 (-)
Type: pfam
Location: 4598 - 4993 (-)
Gene ID: HRGMv2_3724_23_4
Type: TC
Location: 4993 - 6360 (-)
Type: TC
Location: 4993 - 6360 (-)
Gene ID: HRGMv2_3724_23_5
Type: TC
Location: 6392 - 6667 (-)
Type: TC
Location: 6392 - 6667 (-)
Gene ID: HRGMv2_3724_23_6
Type: TC
Location: 6680 - 7144 (-)
Type: TC
Location: 6680 - 7144 (-)
Gene ID: HRGMv2_3724_23_7
Type: TC
Location: 7502 - 8509 (+)
Type: TC
Location: 7502 - 8509 (+)
Gene ID: HRGMv2_3724_23_8
Type: TC
Location: 8536 - 9282 (+)
Type: TC
Location: 8536 - 9282 (+)
Gene ID: HRGMv2_3724_23_9
Type: STP
Location: 9302 - 10306 (+)
Type: STP
Location: 9302 - 10306 (+)
Gene ID: HRGMv2_3724_23_10
Type:
Location: 10543 - 10716 (-)
Type:
Location: 10543 - 10716 (-)
Gene ID: HRGMv2_3724_23_11
Type: TC
Location: 11131 - 12129 (-)
Type: TC
Location: 11131 - 12129 (-)
Gene ID: HRGMv2_3724_23_12
Type: pfam
Location: 12122 - 12751 (-)
Type: pfam
Location: 12122 - 12751 (-)
Gene ID: HRGMv2_3724_23_13
Type: STP
Location: 13158 - 14627 (-)
Type: STP
Location: 13158 - 14627 (-)
Gene ID: HRGMv2_3724_23_14
Type: TC
Location: 14760 - 16766 (-)
Type: TC
Location: 14760 - 16766 (-)
Gene ID: HRGMv2_3724_23_15
Type:
Location: 16879 - 17199 (+)
Type:
Location: 16879 - 17199 (+)
Gene ID: HRGMv2_3724_23_16
Type: CAZyme
Location: 17343 - 18497 (-)
Type: CAZyme
Location: 17343 - 18497 (-)
Gene ID: HRGMv2_3724_23_17
Type: pfam
Location: 18580 - 18879 (-)
Type: pfam
Location: 18580 - 18879 (-)
Gene ID: HRGMv2_3724_23_18
Type: pfam
Location: 18931 - 19713 (-)
Type: pfam
Location: 18931 - 19713 (-)
Gene ID: HRGMv2_3724_23_19
Type: TC
Location: 19697 - 21304 (-)
Type: TC
Location: 19697 - 21304 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Veillonellaceae
Genus
Veillonella
Species
Veillonella fallax
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.