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Cluster: HRGMv2_3716_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3716_10 HRGMv2_3716_10_54 55771 56388 - 1.A.30.2.9
TC HRGMv2_3716_10 HRGMv2_3716_10_55 56424 61508 - 1.B.14.1.4
TF HRGMv2_3716_10 HRGMv2_3716_10_56 61690 62538 - HTH_AraC
pfam HRGMv2_3716_10 HRGMv2_3716_10_57 62856 63251 - DUF454
TC HRGMv2_3716_10 HRGMv2_3716_10_58 63251 64618 - 4.A.7.1.4
TC HRGMv2_3716_10 HRGMv2_3716_10_59 64650 64925 - 4.A.7.1.2
TC HRGMv2_3716_10 HRGMv2_3716_10_60 64938 65402 - 4.A.7.1.1
TC HRGMv2_3716_10 HRGMv2_3716_10_61 65598 66605 + 3.A.1.14.19
TC HRGMv2_3716_10 HRGMv2_3716_10_62 66632 67378 + 3.A.1.14.8
STP HRGMv2_3716_10 HRGMv2_3716_10_63 67399 68403 + Peripla_BP_2
NULL(UNKNOWN) HRGMv2_3716_10 HRGMv2_3716_10_64 68691 68864 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3716_10 HRGMv2_3716_10_65 69283 70281 - 2.A.20.1.5
pfam HRGMv2_3716_10 HRGMv2_3716_10_66 70274 70903 - PhoU_div
STP HRGMv2_3716_10 HRGMv2_3716_10_67 71220 72695 - Fer4
TC HRGMv2_3716_10 HRGMv2_3716_10_68 72828 74834 - 3.A.1.120.6
NULL(UNKNOWN) HRGMv2_3716_10 HRGMv2_3716_10_69 74947 75267 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3716_10 HRGMv2_3716_10_70 75429 76583 - GT28
pfam HRGMv2_3716_10 HRGMv2_3716_10_71 76666 76965 - Bac_DNA_binding | HU-HIG
pfam HRGMv2_3716_10 HRGMv2_3716_10_72 77017 77799 - PRA-PH | MazG | MazG
TC HRGMv2_3716_10 HRGMv2_3716_10_73 77783 79390 - 2.A.66.2.14
Gene ID: HRGMv2_3716_10_54
Type: TC
Location: 55771 - 56388 (-)
Gene ID: HRGMv2_3716_10_55
Type: TC
Location: 56424 - 61508 (-)
Gene ID: HRGMv2_3716_10_56
Type: TF
Location: 61690 - 62538 (-)
Gene ID: HRGMv2_3716_10_57
Type: pfam
Location: 62856 - 63251 (-)
Gene ID: HRGMv2_3716_10_58
Type: TC
Location: 63251 - 64618 (-)
Gene ID: HRGMv2_3716_10_59
Type: TC
Location: 64650 - 64925 (-)
Gene ID: HRGMv2_3716_10_60
Type: TC
Location: 64938 - 65402 (-)
Gene ID: HRGMv2_3716_10_61
Type: TC
Location: 65598 - 66605 (+)
Gene ID: HRGMv2_3716_10_62
Type: TC
Location: 66632 - 67378 (+)
Gene ID: HRGMv2_3716_10_63
Type: STP
Location: 67399 - 68403 (+)
Gene ID: HRGMv2_3716_10_64
Type:
Location: 68691 - 68864 (-)
Gene ID: HRGMv2_3716_10_65
Type: TC
Location: 69283 - 70281 (-)
Gene ID: HRGMv2_3716_10_66
Type: pfam
Location: 70274 - 70903 (-)
Gene ID: HRGMv2_3716_10_67
Type: STP
Location: 71220 - 72695 (-)
Gene ID: HRGMv2_3716_10_68
Type: TC
Location: 72828 - 74834 (-)
Gene ID: HRGMv2_3716_10_69
Type:
Location: 74947 - 75267 (+)
Gene ID: HRGMv2_3716_10_70
Type: CAZyme
Location: 75429 - 76583 (-)
Gene ID: HRGMv2_3716_10_71
Type: pfam
Location: 76666 - 76965 (-)
Gene ID: HRGMv2_3716_10_72
Type: pfam
Location: 77017 - 77799 (-)
Gene ID: HRGMv2_3716_10_73
Type: TC
Location: 77783 - 79390 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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