Cluster: HRGMv2_3702_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3702
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3702_19 | HRGMv2_3702_19_29 | 25813 | 26622 | - | CE4 |
| pfam | HRGMv2_3702_19 | HRGMv2_3702_19_30 | 26647 | 27618 | - | 2-Hacid_dh | 2-Hacid_dh_C |
| pfam | HRGMv2_3702_19 | HRGMv2_3702_19_31 | 27933 | 29012 | - | Radical_SAM |
| TC | HRGMv2_3702_19 | HRGMv2_3702_19_32 | 29074 | 30342 | - | 2.A.40.1.1 |
| TC | HRGMv2_3702_19 | HRGMv2_3702_19_33 | 30405 | 31679 | - | 2.A.103.1.3 |
Gene ID: HRGMv2_3702_19_29
Type: CAZyme
Location: 25813 - 26622 (-)
Type: CAZyme
Location: 25813 - 26622 (-)
Gene ID: HRGMv2_3702_19_30
Type: pfam
Location: 26647 - 27618 (-)
Type: pfam
Location: 26647 - 27618 (-)
Gene ID: HRGMv2_3702_19_31
Type: pfam
Location: 27933 - 29012 (-)
Type: pfam
Location: 27933 - 29012 (-)
Gene ID: HRGMv2_3702_19_32
Type: TC
Location: 29074 - 30342 (-)
Type: TC
Location: 29074 - 30342 (-)
Gene ID: HRGMv2_3702_19_33
Type: TC
Location: 30405 - 31679 (-)
Type: TC
Location: 30405 - 31679 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Species
Megasphaera sp001546855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.