Cluster: HRGMv2_3702_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_3702
- CGC Family ID: CGCFAM_02242
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3702_1 | HRGMv2_3702_1_10 | 9760 | 11892 | - | 3.A.7.7.1 |
| pfam | HRGMv2_3702_1 | HRGMv2_3702_1_11 | 11996 | 13657 | - | AAA_15 | AAA_15 | AAA_21 | OLD-like_TOPRIM |
| CAZyme | HRGMv2_3702_1 | HRGMv2_3702_1_12 | 13765 | 17151 | - | GH13_39 | GH77 |
| CAZyme | HRGMv2_3702_1 | HRGMv2_3702_1_13 | 17223 | 18659 | - | GT5 |
| CAZyme | HRGMv2_3702_1 | HRGMv2_3702_1_14 | 18814 | 20760 | - | CBM48 | GH13_9 |
| CAZyme | HRGMv2_3702_1 | HRGMv2_3702_1_15 | 20780 | 23212 | - | GT35 |
Gene ID: HRGMv2_3702_1_10
Type: TC
Location: 9760 - 11892 (-)
Type: TC
Location: 9760 - 11892 (-)
Gene ID: HRGMv2_3702_1_11
Type: pfam
Location: 11996 - 13657 (-)
Type: pfam
Location: 11996 - 13657 (-)
Gene ID: HRGMv2_3702_1_12
Type: CAZyme
Location: 13765 - 17151 (-)
Type: CAZyme
Location: 13765 - 17151 (-)
Gene ID: HRGMv2_3702_1_13
Type: CAZyme
Location: 17223 - 18659 (-)
Type: CAZyme
Location: 17223 - 18659 (-)
Gene ID: HRGMv2_3702_1_14
Type: CAZyme
Location: 18814 - 20760 (-)
Type: CAZyme
Location: 18814 - 20760 (-)
Gene ID: HRGMv2_3702_1_15
Type: CAZyme
Location: 20780 - 23212 (-)
Type: CAZyme
Location: 20780 - 23212 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Species
Megasphaera sp001546855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.