Cluster: HRGMv2_3701_CGC3
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3701
- CGC Family ID: CGCFAM_01931
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3701_4 | HRGMv2_3701_4_5 | 5019 | 6611 | - | 3.A.1.5.2 |
| TC | HRGMv2_3701_4 | HRGMv2_3701_4_6 | 6608 | 7576 | - | 3.A.1.5.20 |
| TC | HRGMv2_3701_4 | HRGMv2_3701_4_7 | 7573 | 8559 | - | 3.A.1.5.2 |
| TC | HRGMv2_3701_4 | HRGMv2_3701_4_8 | 8559 | 9464 | - | 3.A.1.5.2 |
| TC | HRGMv2_3701_4 | HRGMv2_3701_4_9 | 9464 | 10396 | - | 3.A.1.5.2 |
| TC | HRGMv2_3701_4 | HRGMv2_3701_4_10 | 10533 | 11726 | + | 2.A.1.2.20 |
| STP | HRGMv2_3701_4 | HRGMv2_3701_4_11 | 11723 | 12190 | - | GGDEF |
| NULL(UNKNOWN) | HRGMv2_3701_4 | HRGMv2_3701_4_12 | 12153 | 12596 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3701_4 | HRGMv2_3701_4_13 | 12733 | 14343 | - | 3.D.10.1.2 |
| pfam | HRGMv2_3701_4 | HRGMv2_3701_4_14 | 14353 | 15024 | - | Fer2 | Fer2_4 |
| TC | HRGMv2_3701_4 | HRGMv2_3701_4_15 | 15118 | 18552 | - | 3.B.1.1.1 |
| STP | HRGMv2_3701_4 | HRGMv2_3701_4_16 | 18969 | 19472 | - | Nitroreductase | Nitroreductase |
| TC | HRGMv2_3701_4 | HRGMv2_3701_4_17 | 19850 | 21235 | - | 2.A.25.1.4 |
| pfam | HRGMv2_3701_4 | HRGMv2_3701_4_18 | 21600 | 21986 | - | dCMP_cyt_deam_1 | dCMP_cyt_deam_2 |
| pfam | HRGMv2_3701_4 | HRGMv2_3701_4_19 | 21983 | 22741 | - | SurE |
| CAZyme | HRGMv2_3701_4 | HRGMv2_3701_4_20 | 22753 | 24003 | - | GT2 |
| pfam | HRGMv2_3701_4 | HRGMv2_3701_4_21 | 24024 | 24698 | - | CDP-OH_P_transf |
| pfam | HRGMv2_3701_4 | HRGMv2_3701_4_22 | 24695 | 25348 | - | PS_Dcarbxylase |
| CAZyme | HRGMv2_3701_4 | HRGMv2_3701_4_23 | 25363 | 26094 | - | GT26 |
Gene ID: HRGMv2_3701_4_5
Type: TC
Location: 5019 - 6611 (-)
Type: TC
Location: 5019 - 6611 (-)
Gene ID: HRGMv2_3701_4_6
Type: TC
Location: 6608 - 7576 (-)
Type: TC
Location: 6608 - 7576 (-)
Gene ID: HRGMv2_3701_4_7
Type: TC
Location: 7573 - 8559 (-)
Type: TC
Location: 7573 - 8559 (-)
Gene ID: HRGMv2_3701_4_8
Type: TC
Location: 8559 - 9464 (-)
Type: TC
Location: 8559 - 9464 (-)
Gene ID: HRGMv2_3701_4_9
Type: TC
Location: 9464 - 10396 (-)
Type: TC
Location: 9464 - 10396 (-)
Gene ID: HRGMv2_3701_4_10
Type: TC
Location: 10533 - 11726 (+)
Type: TC
Location: 10533 - 11726 (+)
Gene ID: HRGMv2_3701_4_11
Type: STP
Location: 11723 - 12190 (-)
Type: STP
Location: 11723 - 12190 (-)
Gene ID: HRGMv2_3701_4_12
Type:
Location: 12153 - 12596 (-)
Type:
Location: 12153 - 12596 (-)
Gene ID: HRGMv2_3701_4_13
Type: TC
Location: 12733 - 14343 (-)
Type: TC
Location: 12733 - 14343 (-)
Gene ID: HRGMv2_3701_4_14
Type: pfam
Location: 14353 - 15024 (-)
Type: pfam
Location: 14353 - 15024 (-)
Gene ID: HRGMv2_3701_4_15
Type: TC
Location: 15118 - 18552 (-)
Type: TC
Location: 15118 - 18552 (-)
Gene ID: HRGMv2_3701_4_16
Type: STP
Location: 18969 - 19472 (-)
Type: STP
Location: 18969 - 19472 (-)
Gene ID: HRGMv2_3701_4_17
Type: TC
Location: 19850 - 21235 (-)
Type: TC
Location: 19850 - 21235 (-)
Gene ID: HRGMv2_3701_4_18
Type: pfam
Location: 21600 - 21986 (-)
Type: pfam
Location: 21600 - 21986 (-)
Gene ID: HRGMv2_3701_4_19
Type: pfam
Location: 21983 - 22741 (-)
Type: pfam
Location: 21983 - 22741 (-)
Gene ID: HRGMv2_3701_4_20
Type: CAZyme
Location: 22753 - 24003 (-)
Type: CAZyme
Location: 22753 - 24003 (-)
Gene ID: HRGMv2_3701_4_21
Type: pfam
Location: 24024 - 24698 (-)
Type: pfam
Location: 24024 - 24698 (-)
Gene ID: HRGMv2_3701_4_22
Type: pfam
Location: 24695 - 25348 (-)
Type: pfam
Location: 24695 - 25348 (-)
Gene ID: HRGMv2_3701_4_23
Type: CAZyme
Location: 25363 - 26094 (-)
Type: CAZyme
Location: 25363 - 26094 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.