Cluster: HRGMv2_3701_CGC10
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3701
- CGC Family ID: CGCFAM_01128
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3701_21 | HRGMv2_3701_21_8 | 6346 | 7581 | - | 2.A.1.46.5 |
| TF | HRGMv2_3701_21 | HRGMv2_3701_21_9 | 7736 | 8650 | + | HTH_1 |
| TF | HRGMv2_3701_21 | HRGMv2_3701_21_10 | 8625 | 9500 | - | HTH_1 |
| TC | HRGMv2_3701_21 | HRGMv2_3701_21_11 | 9616 | 11478 | + | 2.A.115.2.14 |
| TC | HRGMv2_3701_21 | HRGMv2_3701_21_12 | 11570 | 12574 | + | 3.A.1.23.1 |
| pfam | HRGMv2_3701_21 | HRGMv2_3701_21_13 | 12587 | 13396 | + | CbiQ |
| TC | HRGMv2_3701_21 | HRGMv2_3701_21_14 | 13393 | 14040 | + | 3.A.1.23.7 |
| NULL(UNKNOWN) | HRGMv2_3701_21 | HRGMv2_3701_21_15 | 14234 | 14416 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3701_21 | HRGMv2_3701_21_16 | 14404 | 15618 | - | GH73 |
| pfam | HRGMv2_3701_21 | HRGMv2_3701_21_17 | 15608 | 16009 | - | CGGC |
| pfam | HRGMv2_3701_21 | HRGMv2_3701_21_18 | 16022 | 16699 | - | CpXC |
| TC | HRGMv2_3701_21 | HRGMv2_3701_21_19 | 16966 | 17286 | - | 2.A.7.1.4 |
| TC | HRGMv2_3701_21 | HRGMv2_3701_21_20 | 17544 | 18410 | + | 2.A.7.3.48 |
| TC | HRGMv2_3701_21 | HRGMv2_3701_21_21 | 18463 | 19692 | - | 2.A.23.1.10 |
Gene ID: HRGMv2_3701_21_8
Type: TC
Location: 6346 - 7581 (-)
Type: TC
Location: 6346 - 7581 (-)
Gene ID: HRGMv2_3701_21_9
Type: TF
Location: 7736 - 8650 (+)
Type: TF
Location: 7736 - 8650 (+)
Gene ID: HRGMv2_3701_21_10
Type: TF
Location: 8625 - 9500 (-)
Type: TF
Location: 8625 - 9500 (-)
Gene ID: HRGMv2_3701_21_11
Type: TC
Location: 9616 - 11478 (+)
Type: TC
Location: 9616 - 11478 (+)
Gene ID: HRGMv2_3701_21_12
Type: TC
Location: 11570 - 12574 (+)
Type: TC
Location: 11570 - 12574 (+)
Gene ID: HRGMv2_3701_21_13
Type: pfam
Location: 12587 - 13396 (+)
Type: pfam
Location: 12587 - 13396 (+)
Gene ID: HRGMv2_3701_21_14
Type: TC
Location: 13393 - 14040 (+)
Type: TC
Location: 13393 - 14040 (+)
Gene ID: HRGMv2_3701_21_15
Type:
Location: 14234 - 14416 (+)
Type:
Location: 14234 - 14416 (+)
Gene ID: HRGMv2_3701_21_16
Type: CAZyme
Location: 14404 - 15618 (-)
Type: CAZyme
Location: 14404 - 15618 (-)
Gene ID: HRGMv2_3701_21_17
Type: pfam
Location: 15608 - 16009 (-)
Type: pfam
Location: 15608 - 16009 (-)
Gene ID: HRGMv2_3701_21_18
Type: pfam
Location: 16022 - 16699 (-)
Type: pfam
Location: 16022 - 16699 (-)
Gene ID: HRGMv2_3701_21_19
Type: TC
Location: 16966 - 17286 (-)
Type: TC
Location: 16966 - 17286 (-)
Gene ID: HRGMv2_3701_21_20
Type: TC
Location: 17544 - 18410 (+)
Type: TC
Location: 17544 - 18410 (+)
Gene ID: HRGMv2_3701_21_21
Type: TC
Location: 18463 - 19692 (-)
Type: TC
Location: 18463 - 19692 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.