Cluster: HRGMv2_3700_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3700
- CGC Family ID: CGCFAM_00279
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3700_23 | HRGMv2_3700_23_1 | 314 | 1699 | - | 2.A.25.1.4 |
| pfam | HRGMv2_3700_23 | HRGMv2_3700_23_2 | 2066 | 2452 | - | dCMP_cyt_deam_1 | dCMP_cyt_deam_2 |
| pfam | HRGMv2_3700_23 | HRGMv2_3700_23_3 | 2449 | 3207 | - | SurE |
| CAZyme | HRGMv2_3700_23 | HRGMv2_3700_23_4 | 3219 | 4469 | - | GT2 |
| pfam | HRGMv2_3700_23 | HRGMv2_3700_23_5 | 4490 | 5164 | - | CDP-OH_P_transf |
| pfam | HRGMv2_3700_23 | HRGMv2_3700_23_6 | 5164 | 5814 | - | PS_Dcarbxylase |
| CAZyme | HRGMv2_3700_23 | HRGMv2_3700_23_7 | 5827 | 6558 | - | GT26 |
Gene ID: HRGMv2_3700_23_1
Type: TC
Location: 314 - 1699 (-)
Type: TC
Location: 314 - 1699 (-)
Gene ID: HRGMv2_3700_23_2
Type: pfam
Location: 2066 - 2452 (-)
Type: pfam
Location: 2066 - 2452 (-)
Gene ID: HRGMv2_3700_23_3
Type: pfam
Location: 2449 - 3207 (-)
Type: pfam
Location: 2449 - 3207 (-)
Gene ID: HRGMv2_3700_23_4
Type: CAZyme
Location: 3219 - 4469 (-)
Type: CAZyme
Location: 3219 - 4469 (-)
Gene ID: HRGMv2_3700_23_5
Type: pfam
Location: 4490 - 5164 (-)
Type: pfam
Location: 4490 - 5164 (-)
Gene ID: HRGMv2_3700_23_6
Type: pfam
Location: 5164 - 5814 (-)
Type: pfam
Location: 5164 - 5814 (-)
Gene ID: HRGMv2_3700_23_7
Type: CAZyme
Location: 5827 - 6558 (-)
Type: CAZyme
Location: 5827 - 6558 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.