Cluster: HRGMv2_3700_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3700
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3700_13 | HRGMv2_3700_13_43 | 42679 | 48159 | + | 1.B.23.1.5 |
| pfam | HRGMv2_3700_13 | HRGMv2_3700_13_44 | 48404 | 49108 | + | Methyltransf_4 | Methyltransf_11 | Methyltransf_25 | Methyltransf_31 |
| TC | HRGMv2_3700_13 | HRGMv2_3700_13_45 | 49062 | 50354 | + | 2.A.103.1.2 |
| TC | HRGMv2_3700_13 | HRGMv2_3700_13_46 | 50376 | 51641 | + | 2.A.40.1.1 |
| pfam | HRGMv2_3700_13 | HRGMv2_3700_13_47 | 51666 | 52745 | + | Radical_SAM |
| pfam | HRGMv2_3700_13 | HRGMv2_3700_13_48 | 53153 | 54130 | + | 2-Hacid_dh | 2-Hacid_dh_C |
| CAZyme | HRGMv2_3700_13 | HRGMv2_3700_13_49 | 54149 | 54961 | + | CE4 |
Gene ID: HRGMv2_3700_13_43
Type: TC
Location: 42679 - 48159 (+)
Type: TC
Location: 42679 - 48159 (+)
Gene ID: HRGMv2_3700_13_44
Type: pfam
Location: 48404 - 49108 (+)
Type: pfam
Location: 48404 - 49108 (+)
Gene ID: HRGMv2_3700_13_45
Type: TC
Location: 49062 - 50354 (+)
Type: TC
Location: 49062 - 50354 (+)
Gene ID: HRGMv2_3700_13_46
Type: TC
Location: 50376 - 51641 (+)
Type: TC
Location: 50376 - 51641 (+)
Gene ID: HRGMv2_3700_13_47
Type: pfam
Location: 51666 - 52745 (+)
Type: pfam
Location: 51666 - 52745 (+)
Gene ID: HRGMv2_3700_13_48
Type: pfam
Location: 53153 - 54130 (+)
Type: pfam
Location: 53153 - 54130 (+)
Gene ID: HRGMv2_3700_13_49
Type: CAZyme
Location: 54149 - 54961 (+)
Type: CAZyme
Location: 54149 - 54961 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.