Cluster: HRGMv2_3700_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3700
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3700_28 | HRGMv2_3700_28_11 | 13326 | 14162 | + | 3.A.1.132.3 |
| pfam | HRGMv2_3700_28 | HRGMv2_3700_28_12 | 14540 | 16384 | - | Alk_phosphatase |
| pfam | HRGMv2_3700_28 | HRGMv2_3700_28_13 | 16503 | 17390 | + | ROK |
| CAZyme | HRGMv2_3700_28 | HRGMv2_3700_28_14 | 17387 | 18535 | - | GH3 |
| CAZyme | HRGMv2_3700_28 | HRGMv2_3700_28_15 | 18522 | 19676 | - | CE9 |
Gene ID: HRGMv2_3700_28_11
Type: TC
Location: 13326 - 14162 (+)
Type: TC
Location: 13326 - 14162 (+)
Gene ID: HRGMv2_3700_28_12
Type: pfam
Location: 14540 - 16384 (-)
Type: pfam
Location: 14540 - 16384 (-)
Gene ID: HRGMv2_3700_28_13
Type: pfam
Location: 16503 - 17390 (+)
Type: pfam
Location: 16503 - 17390 (+)
Gene ID: HRGMv2_3700_28_14
Type: CAZyme
Location: 17387 - 18535 (-)
Type: CAZyme
Location: 17387 - 18535 (-)
Gene ID: HRGMv2_3700_28_15
Type: CAZyme
Location: 18522 - 19676 (-)
Type: CAZyme
Location: 18522 - 19676 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Megasphaeraceae
Genus
Megasphaera
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.