Cluster: HRGMv2_3690_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3690
- CGC Family ID: CGCFAM_01123
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3690_1 | HRGMv2_3690_1_1611 | 1941669 | 1942670 | - | 3.A.15.2.1 |
| TC | HRGMv2_3690_1 | HRGMv2_3690_1_1612 | 1942676 | 1943851 | - | 3.A.15.3.1 |
| CAZyme | HRGMv2_3690_1 | HRGMv2_3690_1_1613 | 1944416 | 1945597 | - | GT4 |
| CAZyme | HRGMv2_3690_1 | HRGMv2_3690_1_1614 | 1945741 | 1946724 | + | GT8 |
Gene ID: HRGMv2_3690_1_1611
Type: TC
Location: 1941669 - 1942670 (-)
Type: TC
Location: 1941669 - 1942670 (-)
Gene ID: HRGMv2_3690_1_1612
Type: TC
Location: 1942676 - 1943851 (-)
Type: TC
Location: 1942676 - 1943851 (-)
Gene ID: HRGMv2_3690_1_1613
Type: CAZyme
Location: 1944416 - 1945597 (-)
Type: CAZyme
Location: 1944416 - 1945597 (-)
Gene ID: HRGMv2_3690_1_1614
Type: CAZyme
Location: 1945741 - 1946724 (+)
Type: CAZyme
Location: 1945741 - 1946724 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Dialisteraceae
Genus
Dialister
Species
Dialister succinatiphilus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3690_1_1611 | vegan > omnivore | 16.42696 | 0.01271 |
| HRGMv2_3690_1_1611 | vegetarian > omnivore | 20.04733 | 0.00565 |
| HRGMv2_3690_1_1611 | vegetarian > vegan | 3.62036 | 0.00565 |
| HRGMv2_3690_1_1613 | vegetarian > omnivore | 3.16735 | 0.00565 |
| HRGMv2_3690_1_1613 | vegetarian > vegan | 2.68242 | 0.00565 |