Cluster: HRGMv2_3690_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3690
- CGC Family ID: CGCFAM_04876
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3690_1 | HRGMv2_3690_1_1401 | 1668109 | 1669404 | - | 2.A.45.2.2 |
| pfam | HRGMv2_3690_1 | HRGMv2_3690_1_1402 | 1669677 | 1671140 | - | UPF0236 |
| pfam | HRGMv2_3690_1 | HRGMv2_3690_1_1403 | 1672533 | 1673156 | + | FTCD_C |
| TC | HRGMv2_3690_1 | HRGMv2_3690_1_1404 | 1673921 | 1675546 | + | 2.A.49.5.5 |
| NULL(UNKNOWN) | HRGMv2_3690_1 | HRGMv2_3690_1_1405 | 1675591 | 1676238 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3690_1 | HRGMv2_3690_1_1406 | 1676345 | 1677262 | - | GT51 |
Gene ID: HRGMv2_3690_1_1401
Type: TC
Location: 1668109 - 1669404 (-)
Type: TC
Location: 1668109 - 1669404 (-)
Gene ID: HRGMv2_3690_1_1402
Type: pfam
Location: 1669677 - 1671140 (-)
Type: pfam
Location: 1669677 - 1671140 (-)
Gene ID: HRGMv2_3690_1_1403
Type: pfam
Location: 1672533 - 1673156 (+)
Type: pfam
Location: 1672533 - 1673156 (+)
Gene ID: HRGMv2_3690_1_1404
Type: TC
Location: 1673921 - 1675546 (+)
Type: TC
Location: 1673921 - 1675546 (+)
Gene ID: HRGMv2_3690_1_1405
Type:
Location: 1675591 - 1676238 (-)
Type:
Location: 1675591 - 1676238 (-)
Gene ID: HRGMv2_3690_1_1406
Type: CAZyme
Location: 1676345 - 1677262 (-)
Type: CAZyme
Location: 1676345 - 1677262 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Dialisteraceae
Genus
Dialister
Species
Dialister succinatiphilus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3690_1_1402 | vegan > omnivore | 17.15203 | 0.01271 |
| HRGMv2_3690_1_1402 | vegetarian > omnivore | 16.39869 | 0.00565 |
| HRGMv2_3690_1_1403 | vegetarian > vegan | 1.53304 | 0.00565 |
| HRGMv2_3690_1_1405 | vegan > omnivore | 17.31155 | 0.01271 |
| HRGMv2_3690_1_1405 | vegetarian > omnivore | 19.51766 | 0.00565 |
| HRGMv2_3690_1_1405 | vegetarian > vegan | 2.20612 | 0.00565 |
| HRGMv2_3690_1_1406 | vegan > omnivore | 1.34124 | 0.01271 |
| HRGMv2_3690_1_1406 | vegetarian > omnivore | 2.37558 | 0.00565 |
| HRGMv2_3690_1_1406 | vegetarian > vegan | 1.03434 | 0.00565 |