Cluster: HRGMv2_3690_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3690
- CGC Family ID: CGCFAM_04877
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3690_1 | HRGMv2_3690_1_779 | 926436 | 927386 | - | 8.A.21.2.4 |
| pfam | HRGMv2_3690_1 | HRGMv2_3690_1_780 | 927624 | 929087 | + | UPF0236 |
| TC | HRGMv2_3690_1 | HRGMv2_3690_1_781 | 929379 | 929714 | - | 2.A.78.1.1 |
| TC | HRGMv2_3690_1 | HRGMv2_3690_1_782 | 929711 | 930424 | - | 2.A.78.1.1 |
| peptidase | HRGMv2_3690_1 | HRGMv2_3690_1_783 | 930688 | 931473 | - | C26.UPW |
| TC | HRGMv2_3690_1 | HRGMv2_3690_1_784 | 931778 | 932995 | - | 2.A.1.21.1 |
| CAZyme | HRGMv2_3690_1 | HRGMv2_3690_1_785 | 933225 | 934298 | - | GT9 |
Gene ID: HRGMv2_3690_1_779
Type: TC
Location: 926436 - 927386 (-)
Type: TC
Location: 926436 - 927386 (-)
Gene ID: HRGMv2_3690_1_780
Type: pfam
Location: 927624 - 929087 (+)
Type: pfam
Location: 927624 - 929087 (+)
Gene ID: HRGMv2_3690_1_781
Type: TC
Location: 929379 - 929714 (-)
Type: TC
Location: 929379 - 929714 (-)
Gene ID: HRGMv2_3690_1_782
Type: TC
Location: 929711 - 930424 (-)
Type: TC
Location: 929711 - 930424 (-)
Gene ID: HRGMv2_3690_1_783
Type: peptidase
Location: 930688 - 931473 (-)
Type: peptidase
Location: 930688 - 931473 (-)
Gene ID: HRGMv2_3690_1_784
Type: TC
Location: 931778 - 932995 (-)
Type: TC
Location: 931778 - 932995 (-)
Gene ID: HRGMv2_3690_1_785
Type: CAZyme
Location: 933225 - 934298 (-)
Type: CAZyme
Location: 933225 - 934298 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Dialisteraceae
Genus
Dialister
Species
Dialister succinatiphilus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3690_1_781 | vegan > omnivore | 2.26256 | 0.01271 |
| HRGMv2_3690_1_781 | vegetarian > omnivore | 1.28969 | 0.00565 |
| HRGMv2_3690_1_782 | vegan > omnivore | 17.43121 | 0.01271 |
| HRGMv2_3690_1_782 | vegetarian > omnivore | 18.41034 | 0.00565 |
| HRGMv2_3690_1_783 | vegan > omnivore | 3.40484 | 0.01271 |
| HRGMv2_3690_1_783 | vegetarian > omnivore | 3.70652 | 0.00565 |
| HRGMv2_3690_1_784 | vegan > omnivore | 2.68132 | 0.01271 |
| HRGMv2_3690_1_784 | vegetarian > omnivore | 4.58395 | 0.00565 |
| HRGMv2_3690_1_784 | vegetarian > vegan | 1.90263 | 0.00565 |
| HRGMv2_3690_1_785 | vegan > omnivore | 18.00956 | 0.01271 |
| HRGMv2_3690_1_785 | vegetarian > omnivore | 19.20689 | 0.00565 |
| HRGMv2_3690_1_785 | vegetarian > vegan | 1.19733 | 0.00565 |