Cluster: HRGMv2_3690_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3690
- CGC Family ID: CGCFAM_03112
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3690_1 | HRGMv2_3690_1_2174 | 2618124 | 2618873 | + | GT26 |
| pfam | HRGMv2_3690_1 | HRGMv2_3690_1_2175 | 2618873 | 2619520 | + | PS_Dcarbxylase |
| pfam | HRGMv2_3690_1 | HRGMv2_3690_1_2176 | 2619521 | 2620249 | + | CDP-OH_P_transf |
| CAZyme | HRGMv2_3690_1 | HRGMv2_3690_1_2177 | 2620249 | 2621508 | + | GT2 |
| pfam | HRGMv2_3690_1 | HRGMv2_3690_1_2178 | 2621695 | 2622927 | + | HlyD_2 | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | HRGMv2_3690_1 | HRGMv2_3690_1_2179 | 2622924 | 2626055 | + | 2.A.6.3.2 |
Gene ID: HRGMv2_3690_1_2174
Type: CAZyme
Location: 2618124 - 2618873 (+)
Type: CAZyme
Location: 2618124 - 2618873 (+)
Gene ID: HRGMv2_3690_1_2175
Type: pfam
Location: 2618873 - 2619520 (+)
Type: pfam
Location: 2618873 - 2619520 (+)
Gene ID: HRGMv2_3690_1_2176
Type: pfam
Location: 2619521 - 2620249 (+)
Type: pfam
Location: 2619521 - 2620249 (+)
Gene ID: HRGMv2_3690_1_2177
Type: CAZyme
Location: 2620249 - 2621508 (+)
Type: CAZyme
Location: 2620249 - 2621508 (+)
Gene ID: HRGMv2_3690_1_2178
Type: pfam
Location: 2621695 - 2622927 (+)
Type: pfam
Location: 2621695 - 2622927 (+)
Gene ID: HRGMv2_3690_1_2179
Type: TC
Location: 2622924 - 2626055 (+)
Type: TC
Location: 2622924 - 2626055 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Dialisteraceae
Genus
Dialister
Species
Dialister succinatiphilus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3690_1_2174 | vegan > omnivore | 18.73723 | 0.01271 |
| HRGMv2_3690_1_2174 | vegetarian > omnivore | 19.28529 | 0.00565 |
| HRGMv2_3690_1_2175 | vegan > omnivore | 1.21363 | 0.01271 |
| HRGMv2_3690_1_2176 | vegan > omnivore | 1.56078 | 0.01271 |
| HRGMv2_3690_1_2176 | vegetarian > omnivore | 1.23659 | 0.00565 |
| HRGMv2_3690_1_2178 | vegan > omnivore | 1.43889 | 0.01271 |
| HRGMv2_3690_1_2178 | vegetarian > omnivore | 2.20455 | 0.00565 |
| HRGMv2_3690_1_2179 | vegan > omnivore | 2.72528 | 0.01271 |
| HRGMv2_3690_1_2179 | vegetarian > omnivore | 2.59556 | 0.00565 |