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Cluster: HRGMv2_3690_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3690_1 HRGMv2_3690_1_2005 2418347 2419237 + 3.A.1.4.10
TC HRGMv2_3690_1 HRGMv2_3690_1_2006 2419237 2420199 + 3.A.1.4.8
TC HRGMv2_3690_1 HRGMv2_3690_1_2007 2420199 2420963 + 3.A.1.4.10
TC HRGMv2_3690_1 HRGMv2_3690_1_2008 2420960 2421682 + 3.A.1.4.10
sulfatase HRGMv2_3690_1 HRGMv2_3690_1_2009 2421944 2424523 + S1_2
pfam HRGMv2_3690_1 HRGMv2_3690_1_2010 2424582 2425205 + CoaE
CAZyme HRGMv2_3690_1 HRGMv2_3690_1_2011 2425202 2425798 + GH23
Gene ID: HRGMv2_3690_1_2005
Type: TC
Location: 2418347 - 2419237 (+)
Gene ID: HRGMv2_3690_1_2006
Type: TC
Location: 2419237 - 2420199 (+)
Gene ID: HRGMv2_3690_1_2007
Type: TC
Location: 2420199 - 2420963 (+)
Gene ID: HRGMv2_3690_1_2008
Type: TC
Location: 2420960 - 2421682 (+)
Gene ID: HRGMv2_3690_1_2009
Type: sulfatase
Location: 2421944 - 2424523 (+)
Gene ID: HRGMv2_3690_1_2010
Type: pfam
Location: 2424582 - 2425205 (+)
Gene ID: HRGMv2_3690_1_2011
Type: CAZyme
Location: 2425202 - 2425798 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3690_1_2009 vegan > omnivore 1.04165 0.01271
HRGMv2_3690_1_2010 vegetarian > omnivore 1.07078 0.00565

🧭 Explore Read Mapping of CGC

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