Cluster: HRGMv2_3674_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3674
- CGC Family ID: CGCFAM_00200
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3674_8 | HRGMv2_3674_8_41 | 42623 | 43471 | - | CBM50 | CBM50 |
| pfam | HRGMv2_3674_8 | HRGMv2_3674_8_42 | 43468 | 44112 | - | LysM | LysM |
| pfam | HRGMv2_3674_8 | HRGMv2_3674_8_43 | 44255 | 45115 | + | PBP_like | PBP_like_2 |
| TC | HRGMv2_3674_8 | HRGMv2_3674_8_44 | 45127 | 46074 | + | 3.A.1.7.5 |
| TC | HRGMv2_3674_8 | HRGMv2_3674_8_45 | 46071 | 46922 | + | 3.A.1.7.5 |
| TC | HRGMv2_3674_8 | HRGMv2_3674_8_46 | 46927 | 47682 | + | 3.A.1.7.5 |
Gene ID: HRGMv2_3674_8_41
Type: CAZyme
Location: 42623 - 43471 (-)
Type: CAZyme
Location: 42623 - 43471 (-)
Gene ID: HRGMv2_3674_8_42
Type: pfam
Location: 43468 - 44112 (-)
Type: pfam
Location: 43468 - 44112 (-)
Gene ID: HRGMv2_3674_8_43
Type: pfam
Location: 44255 - 45115 (+)
Type: pfam
Location: 44255 - 45115 (+)
Gene ID: HRGMv2_3674_8_44
Type: TC
Location: 45127 - 46074 (+)
Type: TC
Location: 45127 - 46074 (+)
Gene ID: HRGMv2_3674_8_45
Type: TC
Location: 46071 - 46922 (+)
Type: TC
Location: 46071 - 46922 (+)
Gene ID: HRGMv2_3674_8_46
Type: TC
Location: 46927 - 47682 (+)
Type: TC
Location: 46927 - 47682 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UMGS1883
Family
UMGS1883
Genus
UMGS1883
Species
UMGS1883 sp905195005
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.