Cluster: HRGMv2_3670_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3670
- CGC Family ID: CGCFAM_00956
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3670_60 | HRGMv2_3670_60_6 | 4774 | 5901 | + | GH88 |
| peptidase | HRGMv2_3670_60 | HRGMv2_3670_60_7 | 5958 | 6746 | - | S09.UPW |
| TF | HRGMv2_3670_60 | HRGMv2_3670_60_8 | 6946 | 7485 | + | HTH_3 |
| TC | HRGMv2_3670_60 | HRGMv2_3670_60_9 | 7505 | 8542 | + | 3.A.1.11.8 |
| TC | HRGMv2_3670_60 | HRGMv2_3670_60_10 | 8557 | 9396 | + | 3.A.1.11.8 |
| TC | HRGMv2_3670_60 | HRGMv2_3670_60_11 | 9413 | 10219 | + | 3.A.1.11.8 |
| TC | HRGMv2_3670_60 | HRGMv2_3670_60_12 | 10253 | 11302 | + | 3.A.1.11.7 |
Gene ID: HRGMv2_3670_60_6
Type: CAZyme
Location: 4774 - 5901 (+)
Type: CAZyme
Location: 4774 - 5901 (+)
Gene ID: HRGMv2_3670_60_7
Type: peptidase
Location: 5958 - 6746 (-)
Type: peptidase
Location: 5958 - 6746 (-)
Gene ID: HRGMv2_3670_60_8
Type: TF
Location: 6946 - 7485 (+)
Type: TF
Location: 6946 - 7485 (+)
Gene ID: HRGMv2_3670_60_9
Type: TC
Location: 7505 - 8542 (+)
Type: TC
Location: 7505 - 8542 (+)
Gene ID: HRGMv2_3670_60_10
Type: TC
Location: 8557 - 9396 (+)
Type: TC
Location: 8557 - 9396 (+)
Gene ID: HRGMv2_3670_60_11
Type: TC
Location: 9413 - 10219 (+)
Type: TC
Location: 9413 - 10219 (+)
Gene ID: HRGMv2_3670_60_12
Type: TC
Location: 10253 - 11302 (+)
Type: TC
Location: 10253 - 11302 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UMGS1810
Family
UMGS1810
Genus
CALGRC01
Species
CALGRC01 sp937959315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.