Cluster: HRGMv2_3660_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3660
- CGC Family ID: CGCFAM_03260
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3660_14 | HRGMv2_3660_14_1 | 240 | 1037 | + | CE4 |
| pfam | HRGMv2_3660_14 | HRGMv2_3660_14_2 | 1165 | 1377 | + | Gin |
| pfam | HRGMv2_3660_14 | HRGMv2_3660_14_3 | 1447 | 2325 | + | Zn_dep_PLPC |
| TC | HRGMv2_3660_14 | HRGMv2_3660_14_4 | 2575 | 3333 | + | 3.A.1.17.8 |
| TC | HRGMv2_3660_14 | HRGMv2_3660_14_5 | 3349 | 4362 | + | 3.A.1.17.13 |
| TC | HRGMv2_3660_14 | HRGMv2_3660_14_6 | 4383 | 5108 | + | 3.A.1.17.13 |
| TC | HRGMv2_3660_14 | HRGMv2_3660_14_7 | 5285 | 6334 | - | 8.A.59.4.1 |
Gene ID: HRGMv2_3660_14_1
Type: CAZyme
Location: 240 - 1037 (+)
Type: CAZyme
Location: 240 - 1037 (+)
Gene ID: HRGMv2_3660_14_2
Type: pfam
Location: 1165 - 1377 (+)
Type: pfam
Location: 1165 - 1377 (+)
Gene ID: HRGMv2_3660_14_3
Type: pfam
Location: 1447 - 2325 (+)
Type: pfam
Location: 1447 - 2325 (+)
Gene ID: HRGMv2_3660_14_4
Type: TC
Location: 2575 - 3333 (+)
Type: TC
Location: 2575 - 3333 (+)
Gene ID: HRGMv2_3660_14_5
Type: TC
Location: 3349 - 4362 (+)
Type: TC
Location: 3349 - 4362 (+)
Gene ID: HRGMv2_3660_14_6
Type: TC
Location: 4383 - 5108 (+)
Type: TC
Location: 4383 - 5108 (+)
Gene ID: HRGMv2_3660_14_7
Type: TC
Location: 5285 - 6334 (-)
Type: TC
Location: 5285 - 6334 (-)
Taxonomic Lineage
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.