Cluster: HRGMv2_3650_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3650
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3650_4 | HRGMv2_3650_4_42 | 44683 | 45672 | - | GH130_2 |
| CAZyme | HRGMv2_3650_4 | HRGMv2_3650_4_43 | 45691 | 46866 | - | GH130_1 |
| pfam | HRGMv2_3650_4 | HRGMv2_3650_4_44 | 46863 | 48044 | - | GlcNAc_2-epim |
| CAZyme | HRGMv2_3650_4 | HRGMv2_3650_4_45 | 48061 | 50190 | - | CBM27 | GH5_7 |
| TC | HRGMv2_3650_4 | HRGMv2_3650_4_46 | 50202 | 51359 | - | 3.A.1.1.18 |
| TC | HRGMv2_3650_4 | HRGMv2_3650_4_47 | 51384 | 52265 | - | 3.A.1.1.28 |
Gene ID: HRGMv2_3650_4_42
Type: CAZyme
Location: 44683 - 45672 (-)
Type: CAZyme
Location: 44683 - 45672 (-)
Gene ID: HRGMv2_3650_4_43
Type: CAZyme
Location: 45691 - 46866 (-)
Type: CAZyme
Location: 45691 - 46866 (-)
Gene ID: HRGMv2_3650_4_44
Type: pfam
Location: 46863 - 48044 (-)
Type: pfam
Location: 46863 - 48044 (-)
Gene ID: HRGMv2_3650_4_45
Type: CAZyme
Location: 48061 - 50190 (-)
Type: CAZyme
Location: 48061 - 50190 (-)
Gene ID: HRGMv2_3650_4_46
Type: TC
Location: 50202 - 51359 (-)
Type: TC
Location: 50202 - 51359 (-)
Gene ID: HRGMv2_3650_4_47
Type: TC
Location: 51384 - 52265 (-)
Type: TC
Location: 51384 - 52265 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.