Cluster: HRGMv2_3650_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3650
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3650_3 | HRGMv2_3650_3_67 | 68573 | 71314 | - | 3.A.5.1.1 |
| pfam | HRGMv2_3650_3 | HRGMv2_3650_3_68 | 71490 | 73184 | + | AMP-binding | AMP-binding_C |
| TC | HRGMv2_3650_3 | HRGMv2_3650_3_69 | 73288 | 75297 | - | 3.A.11.3.1 |
| pfam | HRGMv2_3650_3 | HRGMv2_3650_3_70 | 75287 | 76111 | - | UDG |
| CAZyme | HRGMv2_3650_3 | HRGMv2_3650_3_71 | 76108 | 77334 | - | GT4 |
Gene ID: HRGMv2_3650_3_67
Type: TC
Location: 68573 - 71314 (-)
Type: TC
Location: 68573 - 71314 (-)
Gene ID: HRGMv2_3650_3_68
Type: pfam
Location: 71490 - 73184 (+)
Type: pfam
Location: 71490 - 73184 (+)
Gene ID: HRGMv2_3650_3_69
Type: TC
Location: 73288 - 75297 (-)
Type: TC
Location: 73288 - 75297 (-)
Gene ID: HRGMv2_3650_3_70
Type: pfam
Location: 75287 - 76111 (-)
Type: pfam
Location: 75287 - 76111 (-)
Gene ID: HRGMv2_3650_3_71
Type: CAZyme
Location: 76108 - 77334 (-)
Type: CAZyme
Location: 76108 - 77334 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.