dbCAN Logo

Cluster: HRGMv2_3650_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3650_2 HRGMv2_3650_2_12 6884 7840 + 3.A.1.34.1
TC HRGMv2_3650_2 HRGMv2_3650_2_13 8013 8975 + 3.A.1.34.1
TC HRGMv2_3650_2 HRGMv2_3650_2_14 8968 9771 + 3.A.1.34.1
pfam HRGMv2_3650_2 HRGMv2_3650_2_15 9779 10039 + TSCPD
TC HRGMv2_3650_2 HRGMv2_3650_2_16 10116 10931 - 3.A.1.1.4
TC HRGMv2_3650_2 HRGMv2_3650_2_17 10928 11812 - 3.A.1.1.4
TC HRGMv2_3650_2 HRGMv2_3650_2_18 11893 13173 - 3.A.1.1.4
CAZyme HRGMv2_3650_2 HRGMv2_3650_2_19 13380 16466 + GH2
Gene ID: HRGMv2_3650_2_12
Type: TC
Location: 6884 - 7840 (+)
Gene ID: HRGMv2_3650_2_13
Type: TC
Location: 8013 - 8975 (+)
Gene ID: HRGMv2_3650_2_14
Type: TC
Location: 8968 - 9771 (+)
Gene ID: HRGMv2_3650_2_15
Type: pfam
Location: 9779 - 10039 (+)
Gene ID: HRGMv2_3650_2_16
Type: TC
Location: 10116 - 10931 (-)
Gene ID: HRGMv2_3650_2_17
Type: TC
Location: 10928 - 11812 (-)
Gene ID: HRGMv2_3650_2_18
Type: TC
Location: 11893 - 13173 (-)
Gene ID: HRGMv2_3650_2_19
Type: CAZyme
Location: 13380 - 16466 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Spirochaetota
→
Class
Spirochaetia
→
Order
Treponematales
→
Family
Treponemataceae
→
Genus
Treponema_D
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List