Cluster: HRGMv2_3650_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3650
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3650_32 | HRGMv2_3650_32_4 | 3809 | 4738 | + | GT2 |
| pfam | HRGMv2_3650_32 | HRGMv2_3650_32_5 | 4743 | 5165 | + | FdtA |
| NULL(UNKNOWN) | HRGMv2_3650_32 | HRGMv2_3650_32_6 | 5158 | 5520 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3650_32 | HRGMv2_3650_32_7 | 5525 | 5869 | + | 2.A.7.33.5 |
| CAZyme | HRGMv2_3650_32 | HRGMv2_3650_32_8 | 5922 | 6935 | + | GT8 |
Gene ID: HRGMv2_3650_32_4
Type: CAZyme
Location: 3809 - 4738 (+)
Type: CAZyme
Location: 3809 - 4738 (+)
Gene ID: HRGMv2_3650_32_5
Type: pfam
Location: 4743 - 5165 (+)
Type: pfam
Location: 4743 - 5165 (+)
Gene ID: HRGMv2_3650_32_6
Type:
Location: 5158 - 5520 (+)
Type:
Location: 5158 - 5520 (+)
Gene ID: HRGMv2_3650_32_7
Type: TC
Location: 5525 - 5869 (+)
Type: TC
Location: 5525 - 5869 (+)
Gene ID: HRGMv2_3650_32_8
Type: CAZyme
Location: 5922 - 6935 (+)
Type: CAZyme
Location: 5922 - 6935 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.