Cluster: HRGMv2_3650_CGC27
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3650
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3650_27 | HRGMv2_3650_27_15 | 13680 | 15818 | + | GH13_11 |
| CAZyme | HRGMv2_3650_27 | HRGMv2_3650_27_16 | 15922 | 18369 | + | GT35 |
| pfam | HRGMv2_3650_27 | HRGMv2_3650_27_17 | 18504 | 19400 | + | EamA | EamA |
| TC | HRGMv2_3650_27 | HRGMv2_3650_27_18 | 19527 | 20831 | + | 1.B.9.2.4 |
Gene ID: HRGMv2_3650_27_15
Type: CAZyme
Location: 13680 - 15818 (+)
Type: CAZyme
Location: 13680 - 15818 (+)
Gene ID: HRGMv2_3650_27_16
Type: CAZyme
Location: 15922 - 18369 (+)
Type: CAZyme
Location: 15922 - 18369 (+)
Gene ID: HRGMv2_3650_27_17
Type: pfam
Location: 18504 - 19400 (+)
Type: pfam
Location: 18504 - 19400 (+)
Gene ID: HRGMv2_3650_27_18
Type: TC
Location: 19527 - 20831 (+)
Type: TC
Location: 19527 - 20831 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.